genome.fa.s8624.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008624.1 Hibiscus syriacus cultivar Beakdansim tig00111587_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642794

Tables:   1   2   3   4   

This is table  4  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537466--537505	20	2.0	21	85	14	57	42	2	7	47	1.45
537736--537774	19	2.1	19	95	0	69	20	38	15	25	1.92
537722--537882	65	2.5	65	86	3	218	30	26	16	27	1.96
537722--537902	64	2.8	64	83	2	220	29	26	17	27	1.97
543669--543724	22	2.7	21	83	10	62	30	23	17	28	1.97
543669--543748	42	1.9	42	84	5	108	30	26	17	26	1.97
545251--545294	21	2.1	21	86	0	61	9	36	15	38	1.80
546269--546307	20	2.0	20	94	0	69	33	28	15	23	1.95
546332--546370	19	2.1	19	95	0	69	20	38	15	25	1.92
546269--546476	65	3.2	64	80	8	208	31	25	15	27	1.96
547926--547966	18	2.3	18	86	0	64	29	29	19	21	1.98
552671--552762	31	3.0	31	85	6	123	46	13	6	33	1.68
553668--553716	20	2.5	20	89	0	80	22	24	10	42	1.84
560839--560899	31	2.0	31	83	3	79	37	14	8	39	1.76
577122--577193	20	3.5	20	79	3	90	41	18	23	16	1.89
577137--577212	21	3.7	21	80	3	100	40	18	25	15	1.90
577122--577212	41	2.2	41	100	0	182	40	17	25	16	1.90
577139--577278	41	3.4	42	81	6	137	37	20	21	20	1.94
577201--577315	20	5.7	20	77	5	79	35	22	17	24	1.95
577483--577526	22	2.0	22	95	0	79	20	45	15	18	1.85
577790--577827	20	1.9	20	88	0	58	13	15	21	50	1.78
579147--579191	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579667--579733	20	3.4	20	81	2	73	38	23	22	14	1.92
579667--579787	19	6.6	19	77	13	92	42	22	21	14	1.88
579799--579856	14	3.9	14	79	16	71	8	17	25	48	1.75
579794--579872	32	2.4	33	95	2	142	10	18	24	46	1.80
579813--579928	20	6.3	19	74	11	82	12	19	24	43	1.86
583796--583883	33	2.6	33	90	1	131	39	25	23	11	1.88
583866--583955	39	2.3	38	90	1	135	48	22	17	11	1.78
583771--583955	19	10.1	19	75	14	156	44	22	21	11	1.84
583951--584017	19	3.5	19	85	2	89	10	16	25	47	1.78
584539--584586	20	2.4	20	89	6	71	25	20	29	25	1.99
584945--584980	16	2.2	16	95	0	63	55	13	5	25	1.60
587000--587038	12	3.2	12	82	17	53	58	0	0	41	0.98
587000--587038	13	3.2	13	89	7	55	58	0	0	41	0.98
587000--587047	24	2.0	24	88	4	71	58	0	2	39	1.10
590986--591324	171	2.0	172	95	0	608	40	14	7	37	1.74
594020--594117	42	2.3	42	96	1	178	29	25	4	40	1.74
594701--594733	15	2.3	15	89	5	50	33	12	9	45	1.73
596299--596336	18	2.2	17	90	4	58	44	7	0	47	1.32
596509--596542	2	17.0	2	100	0	68	50	0	0	50	1.00
597500--597551	8	6.1	8	79	18	52	59	0	0	40	0.97
597498--597544	13	3.7	13	88	2	69	59	0	0	40	0.97
597734--597857	36	3.4	36	83	3	160	17	20	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604540--604574	18	1.9	18	88	0	52	28	17	0	54	1.43
605673--605707	8	4.4	8	92	0	61	22	22	37	17	1.94
605694--605756	13	4.5	13	78	18	63	19	20	44	15	1.87
605705--605765	18	3.7	18	77	20	60	21	18	44	16	1.87
605694--605774	31	2.6	31	88	0	117	18	18	45	17	1.86
605733--605778	18	2.6	18	96	0	83	13	15	52	19	1.75
605723--605755	13	2.5	13	100	0	66	18	15	48	18	1.81
612759--612796	18	2.2	17	90	4	58	44	7	0	47	1.32
613788--613833	19	2.4	19	96	0	83	32	19	26	21	1.97
615514--615562	22	2.2	22	100	0	98	20	12	10	57	1.64
618143--618201	29	2.0	29	100	0	118	23	13	13	49	1.78
622751--622809	29	2.0	29	93	0	100	25	11	11	50	1.73
623970--624058	23	3.9	23	95	0	160	4	37	0	58	1.18
623967--624051	36	2.4	36	77	11	88	5	35	0	58	1.22
634128--634166	8	4.9	8	100	0	78	38	23	0	38	1.55
636635--636659	2	12.5	2	100	0	50	0	52	0	48	1.00

Tables:   1   2   3   4

The End!