Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008627.1 Hibiscus syriacus cultivar Beakdansim tig00111594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1073793

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 615 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1038544--1038596
21
2.4
21
78
12
54
54
0
9
35
1.33
1039072--1039119
17
2.7
18
80
9
53
43
12
0
43
1.42
1039104--1039151
24
2.1
23
84
7
62
35
8
0
56
1.30
1039139--1039275
29
4.6
29
75
8
114
37
7
2
52
1.44
1039124--1039258
29
4.5
30
76
7
96
37
8
2
51
1.47
1039493--1039606
28
3.9
28
83
10
113
50
0
8
39
1.39
1039596--1039643
18
2.6
18
76
3
51
41
0
14
43
1.45
1044022--1044071
20
2.5
20
90
0
82
16
10
44
30
1.80
1044324--1044408
40
2.1
40
88
0
134
34
18
14
32
1.91
1045760--1045899
52
2.8
49
80
10
142
42
10
7
38
1.69
1050993--1051036
23
2.0
21
91
8
70
40
0
0
59
0.98
1052706--1052730
7
3.6
7
100
0
50
28
0
32
40
1.57
1053490--1053530
20
2.1
20
86
4
57
36
0
4
58
1.20
1073316--1073352
18
2.1
18
89
0
56
29
16
16
37
1.90
1073421--1073470
19
2.6
19
78
12
57
38
22
14
26
1.91

Tables:   1   2   3   4   5   6

The End!