genome.fa.s8646.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008646.1 Hibiscus syriacus cultivar Beakdansim tig00111633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1024377

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 507 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965325--965518	44	4.5	43	76	8	171	35	20	20	23	1.96
969312--969633	83	3.9	83	84	3	398	33	16	21	28	1.95
969317--969632	166	1.9	166	86	1	445	33	16	21	28	1.95
969832--969874	21	2.0	21	90	0	68	25	25	20	27	1.99
970552--970739	31	6.1	31	91	0	286	36	19	18	26	1.94
972192--972227	17	2.1	17	90	10	56	41	0	5	52	1.24
972786--972888	42	2.5	42	80	0	107	24	33	17	24	1.96
972873--972927	21	2.6	21	82	0	56	27	36	18	18	1.94
972894--972936	21	2.0	21	95	0	77	25	32	20	20	1.97
973458--973537	24	3.3	23	67	10	61	45	13	2	38	1.58
973792--974297	137	3.7	135	87	4	664	34	20	20	23	1.96
994108--994297	36	5.2	36	87	1	238	36	23	19	21	1.95
994679--995396	51	13.6	51	80	9	613	33	19	24	22	1.97
994679--995396	155	4.5	157	80	9	705	33	19	24	22	1.97
994668--995348	206	3.2	207	82	6	746	32	19	24	22	1.97
995385--996587	55	22.1	55	83	6	1247	30	14	26	28	1.95
995385--996587	108	11.1	109	83	5	1251	30	14	26	28	1.95
996605--996759	54	2.9	54	81	5	188	34	18	23	23	1.96
1003127--1003429	147	2.0	148	87	4	441	27	14	20	36	1.92
1003614--1003674	21	2.9	21	80	4	61	49	1	18	31	1.57
1003616--1003681	33	2.0	33	82	5	80	50	1	16	31	1.55
1006737--1006897	64	2.5	63	84	7	182	34	17	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008246--1008547	148	2.0	147	91	2	480	26	15	20	36	1.93
1015987--1016033	22	2.0	24	84	8	62	42	12	4	40	1.63
1019077--1019103	13	2.1	13	100	0	54	37	14	14	33	1.88
1019452--1019506	28	1.9	29	96	3	103	23	14	12	49	1.78
1024094--1024152	29	2.0	29	100	0	118	23	13	13	49	1.78

Tables:   1   2   3   4   5

The End!