genome.fa.s8650.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008650.1 Hibiscus syriacus cultivar Beakdansim tig00111640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1713193

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615066--615102	17	2.3	17	86	9	51	13	2	37	45	1.58
621159--621202	13	3.8	13	72	27	53	75	0	0	25	0.81
625995--626041	23	2.0	23	87	0	67	23	25	23	27	2.00
628744--628790	23	2.0	23	87	0	67	23	25	23	27	2.00
628769--629072	149	2.0	149	93	1	520	34	20	17	27	1.95
630678--630722	21	2.1	21	87	0	63	15	24	28	31	1.96
631686--631731	18	2.3	22	85	14	64	71	0	10	17	1.13
644489--644520	5	6.4	5	92	0	55	0	3	37	59	1.13
646658--646990	111	3.0	112	92	1	555	37	6	10	45	1.65
648483--648522	18	2.2	18	100	0	80	25	32	22	20	1.98
648861--648898	12	3.2	12	88	0	58	39	26	28	5	1.78
653033--653081	11	4.6	11	78	14	50	36	0	2	61	1.08
653029--653075	24	2.0	24	87	8	69	40	0	2	57	1.11
653039--653096	14	3.9	15	78	14	66	37	0	5	56	1.21
653034--653098	31	2.1	31	97	0	121	36	0	4	58	1.19
653848--653883	16	2.2	16	95	0	63	55	11	11	22	1.66
653889--653921	16	2.1	16	94	0	57	39	27	9	24	1.85
656262--656305	15	2.9	15	89	0	61	2	50	4	43	1.35
659965--660004	2	20.0	2	100	0	80	50	0	0	50	1.00
663042--663088	25	1.9	24	82	4	58	48	6	6	38	1.54
664754--665061	43	7.2	43	91	0	490	19	19	17	43	1.89
671623--671676	2	27.0	2	100	0	108	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678939--678981	21	2.0	21	100	0	86	13	23	13	48	1.79
687546--687660	59	1.9	60	81	13	139	39	8	20	32	1.83
689746--689833	3	29.7	3	90	2	133	65	2	1	30	1.12
695587--695678	21	4.4	21	79	5	96	14	20	17	47	1.82
695587--695690	42	2.5	42	76	3	102	15	20	18	46	1.84
696211--696568	78	4.6	78	90	1	495	19	23	22	34	1.97
696211--696568	155	2.3	156	88	1	524	19	23	22	34	1.97
698605--698786	76	2.4	75	84	7	233	33	12	28	25	1.92
716392--716448	26	2.2	25	81	12	62	59	3	0	36	1.14
726046--726101	27	2.1	27	86	0	76	32	7	1	58	1.35
726659--726740	26	3.2	25	67	13	67	15	9	19	54	1.68
737806--737843	2	19.0	2	94	0	67	52	0	0	47	1.00
740752--740789	17	2.2	18	85	4	51	31	0	5	63	1.17
741229--741313	40	2.2	37	85	8	116	52	10	7	29	1.62
743244--743302	29	2.0	29	100	0	118	23	23	13	38	1.91
743512--743692	88	2.1	88	95	1	328	46	21	6	24	1.75
746181--746214	17	2.0	17	100	0	68	47	17	5	29	1.71
755196--755230	14	2.5	14	90	0	52	40	5	5	48	1.51
755307--755364	22	2.6	23	83	8	66	51	0	0	48	1.00
755324--755378	23	2.4	22	77	17	58	50	0	0	49	1.00
759298--759696	41	9.7	41	67	17	123	33	17	17	31	1.93
759309--759694	82	4.7	83	76	5	322	33	17	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760192--760223	12	2.6	13	85	14	50	71	0	12	15	1.14
760850--760887	2	19.0	2	100	0	76	50	0	0	50	1.00
771210--771298	42	2.1	42	93	0	151	47	8	5	38	1.59
777168--777228	32	1.9	32	86	6	88	24	11	21	42	1.86
779141--779170	6	5.0	6	91	0	51	13	50	3	33	1.58
781685--781740	29	1.9	29	82	7	69	66	0	10	23	1.23
782481--782556	2	38.0	2	100	0	152	50	0	0	50	1.00
783606--783657	23	2.2	24	86	6	72	34	19	23	23	1.96
783726--783766	16	2.6	16	88	3	57	29	21	12	36	1.90
785765--785833	23	3.0	23	84	0	102	31	26	24	17	1.97
785920--785958	20	2.0	20	84	0	51	35	17	20	25	1.95
787006--787060	20	2.8	20	97	0	101	27	34	14	23	1.94
796273--796325	24	2.2	24	83	6	63	3	35	1	58	1.27
800539--800587	19	2.6	19	77	6	55	46	14	0	38	1.44
804189--804331	43	3.3	43	79	5	146	36	16	20	26	1.94
813375--813436	23	2.7	23	89	0	88	25	14	33	25	1.94
822213--822250	19	1.9	20	89	10	60	39	5	0	55	1.23
824264--824327	21	2.8	23	79	9	69	14	51	4	29	1.62
824259--824306	21	2.3	21	92	0	78	12	52	4	31	1.58
852076--852162	30	2.8	31	79	11	97	45	0	5	48	1.26
858754--858798	21	2.1	21	87	0	63	31	28	24	15	1.96
860354--860668	149	2.1	149	95	1	560	28	16	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
861464--861530	19	3.6	19	71	4	55	31	16	11	40	1.85
863867--863921	28	2.0	28	100	0	110	36	9	7	47	1.63
864545--864573	14	2.0	15	93	6	51	51	0	0	48	1.00
864644--864669	2	13.0	2	100	0	52	50	0	0	50	1.00
866594--866636	21	2.0	21	95	0	77	20	6	20	51	1.71
866688--866752	27	2.6	25	85	7	78	41	1	1	55	1.18
866710--866786	26	3.0	26	82	3	84	40	2	1	55	1.22
866906--866980	31	2.4	31	79	0	87	48	13	10	28	1.75
867551--867598	21	2.3	21	88	0	78	45	12	14	27	1.81
872211--872258	21	2.3	21	96	0	87	41	12	18	27	1.86
878305--878576	135	2.0	137	94	1	485	32	18	20	28	1.96
879212--879241	2	15.0	2	100	0	60	50	0	0	50	1.00
885540--885573	18	1.9	17	88	5	50	64	5	0	29	1.17
888544--888582	20	2.0	21	85	10	55	28	0	30	41	1.57
890242--890314	19	3.9	19	70	3	58	46	4	17	31	1.67
890311--890368	25	2.2	27	84	9	75	48	5	20	25	1.70
890418--890482	18	3.4	18	68	12	58	29	7	16	46	1.75
890420--890502	39	2.1	39	93	0	139	27	7	16	48	1.73
900132--900158	4	6.8	4	100	0	54	77	0	22	0	0.76
900982--901203	111	2.0	111	95	0	399	36	7	11	45	1.69
904820--904851	10	2.8	12	81	18	50	34	0	50	15	1.45
911578--911805	64	3.6	63	81	7	212	31	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912096--912145	12	4.2	12	82	7	66	32	6	24	38	1.79
912290--912336	15	3.1	15	100	0	94	14	19	31	34	1.92
918539--918766	64	3.6	63	81	7	212	32	20	19	27	1.97
919057--919106	12	4.2	12	82	7	66	32	6	24	38	1.79
919251--919282	15	2.1	15	100	0	64	15	18	31	34	1.93
920466--920542	40	1.9	40	91	0	127	42	15	19	22	1.88
920480--920551	20	3.6	20	78	0	90	44	16	16	22	1.86
920461--920552	40	2.3	40	81	7	123	43	18	17	20	1.88
920650--920702	20	2.7	20	81	0	70	37	20	22	18	1.94
920852--920885	14	2.4	14	85	0	50	29	26	11	32	1.92
920898--920972	20	3.7	20	72	10	71	30	13	28	28	1.94
920511--920953	146	3.0	146	89	0	663	33	18	19	27	1.96
920983--921093	20	5.6	20	74	8	93	41	21	18	18	1.90
921001--921093	40	2.3	40	90	0	150	41	19	18	20	1.90
921145--921200	20	2.8	20	91	0	85	32	16	25	26	1.96
921249--921305	20	2.8	20	89	5	80	21	14	17	47	1.82
921246--921318	20	3.7	19	81	7	74	17	12	20	49	1.79
923420--923486	3	22.3	3	100	0	134	0	32	0	67	0.91
934907--934950	15	2.9	15	86	3	61	18	31	25	25	1.97
935179--935214	16	2.3	15	90	4	54	52	5	0	41	1.24
936252--936276	2	12.5	2	100	0	50	48	0	0	52	1.00
936302--936361	29	2.0	32	83	9	81	41	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944377--944874	166	3.0	166	98	0	951	28	22	23	26	1.99
948311--948403	35	2.5	36	83	11	109	62	1	0	36	1.03
951241--951986	388	1.9	383	90	1	1186	35	16	16	31	1.92
951995--952028	2	17.0	2	100	0	68	50	0	0	50	1.00
952778--952888	39	2.8	39	81	10	145	44	0	20	35	1.52
961538--961613	24	3.2	24	92	0	125	57	19	7	14	1.61
961655--961749	41	2.3	41	98	1	183	38	12	8	40	1.74
971022--971055	17	2.0	17	88	11	52	0	5	23	70	1.09
983205--983342	76	1.9	72	80	11	163	26	15	13	44	1.83
987385--987438	21	2.6	21	90	0	90	29	22	24	24	1.99

Tables:   1   2   3   4   5   6