Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008650.1 Hibiscus syriacus cultivar Beakdansim tig00111640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1713193

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 662 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1529095--1529155
28
2.2
28
93
0
104
55
13
0
31
1.38
1529132--1529180
21
2.3
21
85
3
71
53
16
0
30
1.43
1529818--1529971
30
5.1
30
88
2
220
11
18
47
23
1.80
1529898--1529944
10
4.7
10
75
19
53
8
17
51
23
1.72
1529952--1530038
29
3.0
29
84
0
120
14
29
39
16
1.88
1529921--1530038
58
2.0
60
88
3
177
12
26
41
19
1.87
1530008--1530131
62
2.0
62
100
0
248
20
29
30
19
1.97
1534520--1534566
12
3.7
12
81
15
58
46
17
19
17
1.84
1536369--1536398
11
2.8
11
95
5
53
36
0
10
53
1.35
1537973--1538112
71
2.0
71
95
0
253
45
17
16
20
1.86
1539411--1539451
21
2.0
21
85
0
55
46
7
0
46
1.30
1539476--1539552
21
3.4
21
73
23
75
61
15
7
15
1.56
1542449--1542489
21
2.0
22
85
9
59
24
4
0
70
1.06
1557634--1557672
7
5.4
7
82
17
53
33
0
0
66
0.92
1560475--1560499
13
1.9
13
100
0
50
64
4
0
32
1.12
1560524--1560815
73
3.9
73
78
8
223
55
4
6
33
1.46
1561740--1561783
21
2.1
21
91
0
70
29
0
15
54
1.42
1562281--1562336
19
3.1
18
78
19
62
41
0
7
51
1.29
1563496--1564100
26
24.2
26
74
16
228
45
1
8
44
1.44
1563490--1564124
98
6.5
97
78
13
465
45
2
8
44
1.44
1563809--1563845
16
2.1
18
85
14
51
32
0
16
51
1.45
1563923--1564066
6
24.8
6
65
6
73
51
2
4
40
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1563950--1564105
23
6.5
22
82
8
114
50
2
5
42
1.38
1564037--1564143
14
8.1
14
75
15
59
43
1
4
49
1.34
1564102--1564143
17
2.5
17
80
0
57
40
0
2
57
1.12
1564115--1564172
21
2.7
22
77
15
59
37
3
5
53
1.40
1566466--1566504
11
3.5
11
80
13
53
38
12
0
48
1.42
1566451--1566537
30
3.2
30
80
15
91
43
12
0
43
1.42
1566459--1566507
22
2.2
22
100
0
98
38
14
0
46
1.44
1566480--1566530
15
3.3
16
75
10
61
43
11
0
45
1.40
1566481--1566545
30
2.2
30
91
0
103
49
12
0
38
1.41
1566451--1566552
52
2.0
52
80
3
116
46
12
0
41
1.42
1566491--1566947
73
6.1
73
65
21
173
47
10
1
40
1.47
1566724--1566763
21
1.9
21
100
0
80
57
15
0
27
1.38
1566484--1567159
369
1.8
363
85
9
949
47
12
1
38
1.50
1567098--1567146
21
2.3
20
83
16
64
59
16
0
24
1.37
1567132--1567200
35
2.0
35
94
0
120
37
14
2
44
1.60
1567623--1567681
29
2.0
29
93
0
100
15
30
32
22
1.94
1572795--1572839
16
2.8
16
93
0
81
55
22
13
8
1.65
1575478--1575508
16
1.9
16
100
0
62
38
19
0
41
1.51
1612486--1612522
18
2.1
18
89
0
56
59
16
0
24
1.37
1612636--1612674
12
3.3
12
82
7
53
33
0
0
66
0.92
1616190--1616223
14
2.4
14
95
0
59
17
11
0
70
1.16
1617826--1617861
16
2.2
17
95
5
65
25
27
22
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1630136--1630164
15
1.9
15
100
0
58
13
0
37
48
1.43
1643679--1643795
39
2.9
41
87
5
148
30
9
20
39
1.84
1643880--1643939
25
2.4
25
91
2
95
28
15
16
40
1.89
1650549--1650603
21
2.5
22
79
2
58
40
12
25
21
1.89
1658945--1658989
21
2.1
21
95
0
81
62
0
0
37
0.96
1673216--1673256
16
2.6
16
88
3
57
34
21
7
36
1.82
1673529--1673572
22
2.0
22
86
4
63
65
2
0
31
1.05
1675616--1675694
38
2.1
37
83
6
97
44
0
2
53
1.14
1675835--1675902
18
3.8
18
77
11
77
23
23
8
44
1.81
1679193--1679226
16
2.1
16
88
5
50
44
2
5
47
1.42
1679243--1679267
7
3.6
7
100
0
50
88
0
0
12
0.53
1682005--1682086
32
2.4
34
84
6
114
46
18
13
21
1.83
1685383--1685452
35
2.0
35
91
0
113
44
25
0
30
1.55
1685388--1685466
35
2.3
34
84
6
104
41
29
0
29
1.56
1686415--1686491
35
2.2
35
83
4
93
37
0
18
44
1.50
1690690--1690715
8
3.2
8
100
0
52
0
23
11
65
1.25
1694931--1694999
23
3.1
22
74
13
61
56
10
0
33
1.33
1708435--1708477
17
2.5
17
96
0
77
34
37
2
25
1.69

Tables:   1   2   3   4   5   6

The End!