genome.fa.s8655.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008655.1 Hibiscus syriacus cultivar Beakdansim tig00111649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  378222

Tables:   1   2   3   

This is table  2  of  3  ( 266 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174714--174812	49	2.0	50	94	2	173	38	7	18	36	1.78
176768--177117	81	4.3	81	84	2	443	30	20	10	37	1.87
180792--180840	21	2.3	22	89	6	75	38	20	12	28	1.89
184404--184437	17	2.0	17	94	0	59	55	5	8	29	1.54
184943--184981	20	2.0	20	94	0	69	56	15	10	17	1.66
191872--191905	17	2.0	17	88	0	50	52	5	8	32	1.56
194157--194257	30	3.3	30	70	13	89	14	28	30	25	1.95
195737--195774	3	12.7	3	89	10	60	34	2	0	63	1.09
197720--198085	131	2.8	131	83	0	437	33	10	15	41	1.81
202500--202542	17	2.5	17	84	0	59	39	4	18	37	1.72
210530--210562	17	1.9	17	93	0	57	39	6	21	33	1.78
219438--219519	42	2.0	42	85	4	112	26	21	19	31	1.97
219637--219715	42	1.9	42	82	12	101	24	21	17	36	1.94
220245--220548	132	2.3	132	86	4	418	31	23	16	28	1.96
220733--220781	3	16.3	3	78	0	53	30	0	6	63	1.19
220733--220788	18	3.2	17	87	2	67	30	0	5	64	1.16
220847--220883	15	2.3	17	81	13	51	40	43	13	2	1.58
222760--223112	131	2.7	130	82	5	446	33	11	16	37	1.85
224860--224915	21	2.7	21	88	0	76	26	32	14	26	1.95
229663--229768	37	3.0	35	71	20	96	35	12	17	33	1.88
229406--230174	67	11.6	67	87	2	1000	37	11	19	30	1.88
229871--229982	36	3.3	35	67	16	99	38	10	20	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229638--229952	31	9.5	31	64	22	97	38	11	18	32	1.86
230145--230283	36	3.8	35	71	7	107	38	8	17	34	1.81
230210--230322	36	3.1	34	71	10	100	36	8	16	38	1.80
230168--230323	72	2.1	73	84	4	199	35	8	16	38	1.80
231735--231777	2	21.5	2	100	0	86	48	0	0	51	1.00
234314--234339	3	8.7	3	100	0	52	69	0	0	30	0.89
235406--236018	61	10.0	61	88	1	897	26	24	14	34	1.94
239024--239066	18	2.4	18	100	0	86	27	18	6	46	1.75
240450--240491	21	2.0	21	85	0	57	52	9	7	30	1.61
240648--240690	23	2.0	21	82	17	52	41	0	25	32	1.56
242390--242459	22	3.0	24	74	19	67	41	1	2	54	1.24
250048--250178	36	3.6	36	94	2	219	46	17	19	16	1.84
255772--255816	18	2.4	19	88	3	65	71	0	13	15	1.15
264338--265155	2	408.0	2	64	21	222	45	5	4	44	1.47
264338--265155	89	9.3	85	64	20	230	45	5	4	44	1.47
264812--264953	11	13.6	11	66	21	74	50	9	2	37	1.47
265285--265351	2	33.5	2	71	16	50	49	0	7	43	1.31
265272--265342	23	3.2	21	72	18	54	49	0	8	42	1.33
265232--265338	35	3.0	35	78	13	128	52	0	9	38	1.34
264964--265345	21	17.5	22	67	21	103	48	2	6	41	1.43
265126--265340	22	10.5	21	70	21	77	51	2	8	38	1.45
265994--266028	16	2.2	16	89	0	52	14	37	5	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266430--266495	2	33.0	2	100	0	132	50	0	0	50	1.00
266513--266558	7	6.6	7	87	9	67	23	0	2	73	0.94
266518--266559	4	10.8	4	80	14	52	23	0	0	76	0.79
266503--266559	28	2.0	28	89	0	87	21	0	5	73	1.02
266598--266639	21	2.0	21	85	0	57	19	2	9	69	1.28
267410--267482	36	2.0	36	86	0	101	13	2	9	73	1.18
267527--267568	22	1.9	22	90	0	66	14	4	2	78	1.01
267486--267643	17	9.2	17	68	16	60	13	5	7	73	1.23
267596--267650	23	2.5	22	82	11	67	9	3	5	81	0.95
267595--267653	17	3.5	17	81	6	68	10	3	5	81	0.96
267722--267784	31	2.0	31	93	0	108	26	3	22	47	1.66
267650--267867	82	2.6	82	91	4	328	24	4	19	51	1.64
267804--267881	32	2.5	32	93	2	131	28	2	25	43	1.68
267922--267980	31	1.9	30	89	3	91	15	1	6	76	1.07
267938--267983	17	2.6	19	80	16	55	15	0	8	76	1.02
267900--268020	54	2.2	54	78	10	122	14	4	5	76	1.13
267916--268020	18	5.9	17	72	14	70	12	3	6	77	1.10
270312--270419	57	1.9	57	88	1	164	26	13	8	50	1.70
270518--270609	22	4.2	22	88	1	114	22	9	30	36	1.87
271220--271256	19	1.9	19	94	0	65	45	2	10	40	1.53
277685--277759	32	2.4	31	86	8	107	33	32	24	10	1.89
278870--278904	18	1.9	18	88	0	52	45	2	14	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285042--285087	17	2.7	17	96	0	83	39	6	8	45	1.61
285041--285107	17	4.2	16	81	11	61	34	4	8	52	1.53
286670--286723	6	8.7	6	80	9	56	14	18	14	51	1.76
288898--288932	11	3.1	11	91	4	52	80	8	11	0	0.92
288905--288957	25	2.2	24	86	10	72	81	5	11	1	0.94
288906--288958	16	3.4	16	76	12	56	79	5	13	1	0.99
290064--290169	36	2.9	36	83	6	117	31	21	16	31	1.95
290422--291000	36	16.1	36	78	10	409	26	21	13	37	1.91
290422--291102	72	9.6	72	81	8	530	27	21	13	37	1.91
290422--290825	108	3.7	108	86	6	508	25	21	13	38	1.91
290844--290909	21	3.4	21	67	26	63	27	27	9	36	1.87
290623--291000	103	3.6	102	86	5	483	27	21	13	37	1.91
291080--291127	13	3.1	17	66	27	52	29	18	16	35	1.93
290965--291202	105	2.3	105	88	2	358	27	18	15	37	1.92
291073--291134	29	2.1	29	87	0	88	32	14	17	35	1.90
291177--291297	61	2.0	61	90	3	190	33	17	11	37	1.86
291888--291951	19	3.3	19	65	26	53	51	14	20	14	1.76
291887--291954	22	3.3	22	69	26	76	52	13	20	13	1.73
291876--291973	39	2.5	39	96	0	187	48	12	20	18	1.79
293647--293676	2	15.0	2	100	0	60	50	0	0	50	1.00
295604--295721	61	2.0	59	90	9	188	34	6	6	51	1.55
296382--296455	23	3.2	23	80	5	78	51	14	24	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299214--299264	21	2.5	21	84	9	61	23	19	23	33	1.97
299245--299293	16	3.0	17	85	8	66	26	18	16	38	1.91
299907--300030	23	5.3	23	82	10	137	16	25	24	33	1.96
300000--300045	24	1.9	24	86	0	65	19	26	26	28	1.99
300841--301201	180	2.0	180	99	0	713	33	15	24	26	1.95
304767--304953	60	3.1	59	76	5	178	30	23	5	40	1.78
305505--305534	2	15.0	2	100	0	60	50	0	0	50	1.00
309427--309538	46	2.5	46	89	4	167	36	12	5	45	1.65
309934--309988	28	2.0	28	85	7	76	29	7	18	45	1.76
310045--310109	15	4.4	14	75	21	53	66	3	1	29	1.16
310028--310110	23	3.7	22	77	9	78	65	2	1	31	1.13
310042--310154	21	5.4	21	71	14	74	67	3	0	28	1.13
312740--312913	20	8.6	20	87	2	233	39	21	18	20	1.93
312880--312942	20	3.2	20	86	8	76	33	26	17	22	1.96
314114--314203	20	4.6	20	83	1	92	45	22	16	15	1.85
314300--314365	22	3.0	22	90	0	105	21	15	39	24	1.91
314563--314696	20	6.7	20	86	1	187	20	20	20	38	1.94
314545--314696	60	2.5	60	85	5	191	20	21	21	36	1.95
314545--314719	40	4.3	41	83	3	178	23	20	21	34	1.96
314610--314737	61	2.1	61	82	5	152	26	19	21	32	1.97
315336--315400	26	2.4	27	90	7	98	41	0	7	50	1.31
315367--315623	36	6.9	36	90	4	343	45	4	7	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315468--315562	11	8.1	11	69	21	59	47	7	7	37	1.60
315367--315623	112	2.3	111	87	3	363	45	4	7	42	1.50
315623--315704	2	41.5	2	97	2	157	51	0	0	48	1.00
315688--315764	36	2.0	40	85	11	110	41	1	7	49	1.40
315744--315783	20	2.0	20	85	0	53	40	2	12	45	1.56
316958--317019	5	11.8	5	75	21	56	19	6	0	74	1.03
316990--317026	13	2.9	13	92	4	58	24	0	0	75	0.80
316993--317032	12	3.2	12	89	3	53	20	2	0	77	0.88
317698--317767	31	2.3	31	84	0	95	20	24	12	42	1.86
318419--318469	26	1.9	26	84	4	66	50	9	5	33	1.59

Tables:   1   2   3