genome.fa.s8668.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008668.1 Hibiscus syriacus cultivar Beakdansim tig00111671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2122653

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1078 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196169--196296	47	2.8	45	84	5	177	32	19	7	41	1.78
199961--200001	13	3.5	13	75	25	54	24	26	26	21	2.00
199947--200013	22	3.0	22	95	2	116	23	28	26	20	1.99
201731--201773	21	2.0	21	86	0	59	16	27	27	27	1.97
204938--204978	13	3.5	13	75	25	54	24	26	26	21	2.00
204924--204990	22	3.0	22	95	2	116	23	28	26	20	1.99
206700--206745	21	2.2	21	88	0	65	15	26	28	30	1.96
210082--210106	13	1.9	13	100	0	50	32	36	8	24	1.84
212078--212206	47	2.9	44	88	6	195	31	23	7	37	1.83
215979--216089	58	1.9	58	85	7	154	36	9	11	41	1.75
222618--222642	13	1.9	13	100	0	50	32	36	8	24	1.84
224638--224767	47	2.9	45	89	5	199	30	23	7	38	1.83
237650--237689	21	1.9	21	89	0	62	30	20	15	35	1.93
240014--240057	20	2.2	20	91	0	70	25	6	9	59	1.53
241473--241627	81	1.9	79	91	6	251	43	6	26	23	1.77
244836--245135	81	3.7	79	82	7	338	22	21	23	32	1.98
249206--249277	2	36.5	2	97	2	137	50	0	0	50	1.00
250318--250367	16	3.1	16	97	0	91	30	10	6	54	1.58
253498--253580	9	9.0	9	73	10	60	80	7	12	0	0.89
253513--253548	10	3.8	10	92	7	58	83	8	8	0	0.82
253495--253594	23	4.3	22	77	11	85	79	7	13	1	0.99
253495--253583	19	4.9	18	72	14	60	79	6	13	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253492--253577	33	2.6	32	82	12	95	80	5	13	0	0.89
253498--253576	17	4.8	17	73	14	58	81	6	12	0	0.88
253492--253577	10	8.1	10	71	25	52	80	5	13	0	0.89
253488--253605	46	2.5	49	79	9	129	76	7	14	1	1.08
253499--253594	29	3.3	29	75	11	99	79	7	12	1	0.99
254226--254280	22	2.5	22	93	0	92	38	25	14	21	1.92
254442--254648	106	2.0	106	93	0	351	33	25	17	22	1.96
254587--254691	43	2.4	43	98	0	201	33	27	20	19	1.96
254481--254797	149	2.1	149	93	1	537	33	26	18	20	1.96
254630--255815	106	11.2	106	93	1	1948	33	25	18	22	1.96
254442--254903	255	1.8	255	95	0	834	33	26	18	21	1.96
255521--256044	276	1.9	276	92	0	877	34	25	18	22	1.96
255733--255878	63	2.3	64	91	1	231	32	26	17	23	1.97
255627--255974	170	2.1	169	94	0	615	33	25	17	23	1.96
255797--256190	106	3.8	106	81	8	398	34	24	18	22	1.96
255954--256138	95	1.9	95	84	2	246	34	23	21	21	1.97
257461--257510	16	3.1	16	97	0	91	30	10	6	54	1.58
258828--258923	18	5.2	18	88	3	120	18	46	18	15	1.84
258907--258940	15	2.1	16	89	10	52	14	35	26	23	1.94
260028--260062	18	1.9	18	88	0	52	54	0	17	28	1.43
266185--266320	68	2.0	68	100	0	272	17	22	25	35	1.95
272239--272315	36	2.1	37	97	2	147	33	22	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272031--272485	245	1.9	247	99	0	896	39	17	12	31	1.87
275751--275785	16	2.1	17	89	5	54	60	31	2	5	1.35
276348--276381	17	1.9	17	88	5	50	29	8	17	44	1.79
279012--279204	99	1.9	99	89	0	296	38	8	15	37	1.77
289476--289503	13	2.2	13	100	0	56	35	0	0	64	0.94
290605--290664	28	2.1	28	93	0	102	41	20	5	33	1.74
296333--296608	151	1.8	151	100	0	552	30	15	18	35	1.92
298436--298612	60	3.0	58	76	8	185	40	5	20	34	1.74
299060--299120	2	31.0	2	96	3	115	50	0	0	49	1.00
303111--303138	12	2.3	12	100	0	56	78	0	0	21	0.75
305502--305634	60	2.2	60	81	2	142	32	15	19	32	1.93
309171--309216	11	4.2	11	81	16	51	69	0	2	28	1.00
309418--309464	2	23.5	2	100	0	94	51	0	0	48	1.00
310056--310113	29	2.0	29	96	0	107	50	3	15	31	1.61
310757--310795	2	19.5	2	100	0	78	51	0	0	48	1.00
316398--316422	4	6.2	4	100	0	50	48	0	24	28	1.52
317762--317801	20	2.0	21	85	5	55	70	0	7	22	1.12
317789--317827	20	2.0	20	85	10	53	58	7	17	15	1.59
320842--320962	64	1.9	64	98	0	233	38	9	21	30	1.86
321189--321376	108	1.8	105	88	9	296	40	8	13	37	1.75
329487--329849	181	2.0	182	99	0	719	32	13	17	37	1.88
329880--329912	2	16.5	2	100	0	66	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331342--331400	22	2.7	22	97	0	109	52	0	0	47	1.00
331346--331408	22	3.2	20	86	8	76	50	0	0	49	1.00
331746--331783	18	2.2	17	95	4	67	13	10	0	76	1.02
334148--334173	5	5.2	5	100	0	52	19	38	0	42	1.51
335922--335976	2	27.5	2	96	0	101	47	0	1	50	1.11
336303--336364	28	2.2	29	85	2	81	56	8	9	25	1.59
336360--336392	11	2.8	12	90	9	59	75	0	0	24	0.80
336861--336914	27	2.0	27	100	0	108	25	14	14	44	1.84
337345--337391	24	2.0	24	91	0	76	25	36	25	12	1.92
337347--337401	24	2.3	24	81	6	67	23	38	23	14	1.92
337398--337452	23	2.4	23	87	0	83	29	23	38	9	1.85
337535--337594	23	2.6	23	81	5	68	11	36	25	26	1.90
337582--337638	10	5.7	10	80	15	73	10	26	36	26	1.89
337582--337639	20	2.9	20	97	0	107	10	27	36	25	1.89
337679--337735	29	2.0	29	89	6	89	24	24	35	15	1.95
339514--339563	5	10.4	5	95	4	86	0	20	0	80	0.72
341059--341171	60	1.9	60	81	3	138	38	9	11	39	1.74
344983--345068	43	2.0	43	100	0	172	23	20	32	23	1.98
347324--347816	106	4.7	106	97	0	914	23	17	25	33	1.96
347324--348044	212	3.5	211	92	4	1205	23	17	24	33	1.96
347750--347904	43	3.4	43	66	14	123	21	18	25	34	1.96
347607--348015	199	2.0	200	94	0	721	23	17	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347713--348015	93	3.1	93	87	8	417	23	17	25	33	1.97
347808--348044	106	2.2	105	91	3	386	24	16	24	33	1.96
352137--352222	43	2.0	43	100	0	172	23	20	32	23	1.98
354678--354899	111	2.0	111	93	0	381	36	8	9	46	1.66
358044--358100	12	4.8	12	80	8	71	28	5	29	36	1.79
358869--358899	6	5.2	6	92	0	53	32	48	16	3	1.62
360929--360992	24	2.7	24	80	0	74	50	14	7	28	1.70
374563--374632	35	2.0	35	100	0	140	37	22	14	25	1.92
376483--376544	29	2.1	29	87	0	88	30	4	16	48	1.67
376876--376953	36	2.2	36	86	2	104	43	25	1	29	1.63
377740--377828	36	2.5	37	82	7	105	30	2	25	41	1.68
388566--388956	195	2.0	195	100	0	782	34	24	15	25	1.94
396546--396617	3	24.0	3	97	0	135	65	1	0	33	1.02
403345--403836	227	2.2	227	94	2	857	44	7	8	39	1.63
403887--403941	20	2.7	21	94	2	94	38	20	16	25	1.92
403939--403998	20	3.1	19	76	9	57	55	10	16	18	1.69
404131--404177	20	2.4	19	89	10	76	55	10	17	17	1.69
403924--404391	178	2.6	181	89	2	685	42	13	17	26	1.86
404312--404358	20	2.4	19	79	10	58	53	8	17	21	1.70
403932--404391	181	2.6	178	89	2	681	42	13	17	26	1.87
406573--406637	21	3.1	21	93	0	103	41	10	30	16	1.83
406671--406736	33	2.0	33	90	0	105	28	0	48	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408524--408572	19	2.6	19	96	0	89	32	2	10	55	1.45
408691--409866	200	5.9	200	97	0	2185	36	14	17	31	1.90
411343--411411	3	23.0	3	78	0	75	34	7	31	26	1.84
411339--411411	12	5.8	12	82	9	83	34	8	31	26	1.86
412614--413553	183	5.1	183	95	1	1622	35	14	16	33	1.89
413390--413428	21	2.0	20	85	10	53	41	10	15	33	1.81
416015--416079	25	2.6	25	97	0	121	40	10	12	36	1.78
416421--416493	23	3.2	23	88	0	110	34	5	20	39	1.76
416421--416518	46	2.1	45	81	7	108	33	7	17	41	1.77
416910--416982	23	3.2	23	84	0	92	34	4	20	41	1.72

Tables:   1   2   3   4   5   6   7   8   9