genome.fa.s867.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000867.1 Hibiscus syriacus cultivar Beakdansim tig00001674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  604573

Tables:   1   2   3   

This is table  2  of  3  ( 332 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304001--304071	20	3.0	24	62	22	60	42	9	22	25	1.84
306304--306365	32	2.0	32	96	3	117	61	9	14	14	1.57
308285--308344	29	2.1	29	83	0	75	65	8	13	13	1.48
309945--309992	3	17.0	3	83	12	66	66	0	0	33	0.92
309951--309998	23	2.1	22	88	3	69	66	2	2	29	1.14
316443--316506	3	22.0	3	78	12	71	28	3	1	67	1.15
316440--316504	32	2.0	32	91	5	105	26	4	3	66	1.26
322241--322267	13	2.1	13	100	0	54	37	22	33	7	1.82
323114--323191	26	3.2	25	64	22	67	23	23	11	42	1.86
325000--325034	4	9.2	4	87	12	56	48	25	0	25	1.51
325001--325042	22	2.0	21	90	4	66	50	23	2	23	1.61
325581--325698	36	3.3	36	82	8	150	34	16	12	36	1.86
325581--325715	71	1.9	72	83	4	175	33	19	14	33	1.91
325788--325880	36	2.6	36	81	3	118	31	19	12	36	1.89
326122--326341	27	7.9	27	85	8	264	27	11	15	45	1.80
326121--326341	57	4.0	55	84	7	268	28	11	15	45	1.80
326122--326341	84	2.6	83	86	4	282	27	11	15	45	1.80
326443--326510	28	2.5	28	90	2	102	33	7	14	44	1.73
326405--326577	94	1.8	93	85	6	242	32	10	14	42	1.79
326456--326720	66	4.1	64	78	7	268	31	11	12	44	1.78
326462--326831	131	2.9	125	75	11	348	31	12	12	44	1.78
326727--326853	65	2.0	64	88	1	191	32	14	11	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326607--326831	120	1.9	120	81	5	276	31	13	12	43	1.81
326835--326914	40	2.0	40	90	4	126	31	21	11	36	1.88
327429--327509	28	2.9	28	83	8	96	24	14	13	46	1.81
327414--327489	28	2.6	28	82	14	93	26	15	11	46	1.81
327538--327851	40	7.4	40	72	14	186	23	32	19	24	1.97
327568--327772	46	4.7	46	72	12	178	22	30	20	26	1.98
327535--327972	86	5.1	86	70	16	289	23	31	18	25	1.97
327661--327851	43	4.4	43	73	12	176	24	33	19	23	1.97
327575--327962	129	3.0	129	91	3	591	23	31	19	25	1.98
328145--328208	3	22.0	3	78	12	71	28	3	1	67	1.15
328142--328206	32	2.0	32	91	5	105	26	4	3	66	1.26
336764--336801	17	2.2	17	95	0	67	34	13	28	23	1.92
343761--343871	57	1.9	57	87	0	159	41	9	14	35	1.77
350123--350230	23	4.9	23	84	8	152	34	17	22	25	1.96
350146--350227	42	2.0	42	97	0	155	34	15	21	28	1.95
350112--350230	65	1.9	61	86	6	166	33	16	21	27	1.95
350301--350426	16	8.1	16	77	5	132	33	22	9	34	1.86
350325--350440	15	7.5	15	76	5	124	33	23	7	35	1.83
350309--350440	31	4.3	31	98	0	255	33	22	8	35	1.84
358437--358476	17	2.4	17	87	4	55	47	2	2	47	1.29
358526--358553	11	2.5	11	100	0	56	32	0	21	46	1.52
370278--370319	22	1.9	22	85	0	57	54	2	2	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371568--371651	44	1.9	44	97	0	159	22	1	7	69	1.20
374302--374388	29	3.0	29	87	0	129	17	39	27	16	1.90
374397--374479	10	8.3	10	74	19	75	22	50	18	8	1.73
374367--374449	40	2.1	40	82	8	98	21	49	18	10	1.77
374393--374499	30	3.6	30	97	0	205	23	50	16	9	1.74
375138--375181	21	2.1	21	91	0	70	29	0	15	54	1.42
378324--379269	14	68.3	14	69	21	332	42	2	8	46	1.47
378413--378477	19	3.7	19	74	19	77	41	1	10	46	1.48
378399--378493	33	2.9	33	98	0	181	42	3	9	45	1.52
378639--378703	19	3.7	19	74	19	77	41	1	10	46	1.48
378625--378719	33	2.9	33	98	0	181	42	3	9	45	1.52
378279--379088	226	3.6	226	91	5	1298	42	2	9	46	1.49
378786--378834	15	3.3	15	91	2	73	51	4	2	42	1.32
378995--379239	26	9.7	26	76	13	138	43	1	8	46	1.44
378928--379209	124	2.3	122	85	3	386	42	1	9	46	1.45
379233--379288	20	3.0	20	80	12	66	46	3	7	42	1.48
378524--379288	75	10.6	72	69	18	227	42	2	8	46	1.47
381433--381463	15	2.1	14	94	5	53	54	6	0	38	1.26
381438--381484	16	3.0	16	84	9	53	59	10	0	29	1.31
381525--381605	33	2.5	33	84	11	98	49	12	0	38	1.41
381646--381736	44	2.0	48	85	12	129	48	10	0	40	1.38
381717--381805	41	2.2	40	78	8	90	46	10	1	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381841--381879	16	2.3	18	86	8	55	56	5	0	38	1.22
381904--381935	16	1.9	17	93	6	57	0	37	0	62	0.95
382195--382260	29	2.3	29	91	0	105	22	33	30	13	1.93
382247--382328	32	2.6	32	100	0	164	9	36	26	26	1.88
382383--382427	20	2.2	20	96	0	81	13	26	26	33	1.93
382428--382487	29	2.1	29	93	0	102	20	28	26	25	1.99
385283--385313	3	10.3	3	100	0	62	0	35	0	64	0.94
386147--386195	24	2.0	24	84	7	64	34	30	14	20	1.92
387989--388038	26	1.9	26	87	0	73	58	6	8	28	1.51
388851--388875	12	2.1	12	100	0	50	44	0	16	40	1.47
394631--394655	2	12.5	2	100	0	50	48	0	0	52	1.00
399120--399163	19	2.3	18	81	14	52	52	6	2	38	1.41
399099--399160	31	2.0	32	83	3	81	50	9	3	37	1.52
402228--402267	3	13.3	3	100	0	80	0	32	0	67	0.91
408576--408736	64	2.5	63	85	5	207	35	17	20	26	1.95
409203--409420	103	2.1	103	94	0	391	24	12	25	38	1.90
409437--409499	23	2.7	23	85	4	83	22	26	25	25	2.00
415514--415674	64	2.5	63	82	7	164	36	18	19	26	1.95
416135--416360	103	2.2	103	97	1	427	25	13	24	36	1.92
416369--416431	23	2.7	23	85	4	83	22	26	25	25	2.00
421923--421989	31	2.2	31	86	0	89	25	29	11	32	1.92
429904--429978	18	4.0	19	73	17	68	37	12	12	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429905--430000	40	2.4	41	87	6	144	36	13	12	37	1.83
429962--430072	26	4.4	26	82	8	115	34	15	16	34	1.90
429962--430057	26	3.7	26	86	6	117	32	15	15	36	1.89
433549--433597	23	2.1	24	88	3	73	12	18	26	42	1.85
446327--446436	58	1.9	58	88	3	168	41	10	24	23	1.85
455352--455456	51	2.0	52	90	1	167	40	16	4	39	1.69
458766--458811	22	2.0	22	83	12	56	52	13	2	32	1.52
459844--459870	9	3.0	9	100	0	54	55	11	11	22	1.66
462481--462528	11	4.7	10	78	12	53	0	8	16	75	1.04
462481--462520	11	3.6	11	90	6	55	0	10	17	72	1.11
462481--462527	21	2.2	21	85	7	60	0	8	14	76	1.01
463367--463412	22	2.0	22	83	12	56	52	13	2	32	1.52
467952--467997	22	2.0	22	83	12	56	52	13	2	32	1.52
470558--470599	16	2.6	16	88	0	66	57	16	2	23	1.51
472770--472803	3	11.3	3	93	0	59	64	0	2	32	1.08
474347--474415	35	2.0	35	94	0	120	33	26	11	28	1.91
476730--476788	27	2.2	27	100	0	118	20	5	32	42	1.74
477061--477110	23	2.2	23	96	0	91	36	0	20	44	1.52
481520--481629	47	2.4	46	82	7	127	40	8	20	30	1.81
484364--484432	18	3.9	17	80	10	68	75	2	15	5	1.12
484387--484463	6	13.3	6	72	12	54	75	2	18	3	1.07
484402--484455	22	2.4	23	87	12	85	74	3	18	3	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484384--484469	34	2.5	33	87	9	111	74	2	18	4	1.10
484368--484485	51	2.3	50	81	12	127	72	2	19	5	1.18
488606--488731	47	2.8	45	84	5	155	39	7	22	30	1.82
490097--490127	15	2.1	15	93	0	53	45	0	0	54	0.99
494888--494913	3	8.7	3	100	0	52	0	34	0	65	0.93
496506--496536	15	2.1	15	93	0	53	45	0	32	22	1.53
500090--500121	8	4.0	8	95	0	55	37	0	15	46	1.46
502180--502263	29	2.9	29	89	1	116	20	32	30	16	1.95
502818--502879	28	2.1	30	94	5	110	30	0	12	56	1.37
503352--503381	15	1.9	16	93	6	53	43	0	10	46	1.37

Tables:   1   2   3