genome.fa.s867.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000867.1 Hibiscus syriacus cultivar Beakdansim tig00001674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  604573

Tables:   1   2   3   

This is table  3  of  3  ( 332 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503493--503580	42	2.1	41	81	10	99	46	4	3	45	1.40
503500--503578	26	2.9	27	77	15	83	48	5	3	43	1.43
503499--503595	29	3.4	28	72	17	76	48	4	4	43	1.41
506626--506706	18	4.8	18	70	11	64	46	0	11	41	1.39
506611--506730	49	2.4	49	97	0	231	42	0	13	44	1.43
506702--506742	22	1.9	21	85	14	57	36	0	12	51	1.40
506741--507084	12	28.2	11	70	15	150	43	1	9	45	1.45
506701--506798	27	3.6	27	86	10	130	36	0	11	52	1.38
506775--506809	8	4.5	8	85	7	54	37	0	11	51	1.38
506806--507084	26	11.3	26	77	16	236	44	1	8	44	1.45
506889--506944	19	3.1	19	75	21	66	39	0	12	48	1.41
506709--507033	124	2.6	122	86	9	428	42	1	10	46	1.45
506806--507097	98	3.0	98	83	9	348	44	2	8	44	1.45
507169--507290	59	2.1	57	89	3	181	38	4	8	49	1.52
507202--507246	24	1.9	24	86	4	65	40	2	4	53	1.33
507213--507254	17	2.5	17	80	0	57	40	0	2	57	1.12
509167--509329	65	2.5	65	86	3	231	26	15	26	30	1.96
509169--509378	65	3.2	64	83	8	223	26	17	26	30	1.97
509546--509585	20	2.0	21	85	14	57	45	7	5	42	1.54
515778--515817	21	1.9	21	85	10	55	35	10	2	52	1.48
517763--517972	65	3.3	63	83	9	246	26	17	25	30	1.97
518141--518180	20	2.0	21	85	14	57	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519250--519283	15	2.2	16	94	5	61	55	5	0	38	1.24
519338--519441	30	3.4	30	86	4	138	47	13	0	38	1.50
519341--519390	15	3.3	15	69	20	50	44	14	0	42	1.44
519959--520043	29	2.9	29	85	0	125	20	34	27	18	1.96
520029--520164	72	1.9	72	96	3	256	15	38	25	20	1.92
524103--524185	35	2.4	36	81	18	104	27	7	9	55	1.58
532363--532431	24	2.9	24	97	0	129	20	17	34	27	1.95
532459--532510	3	16.7	3	80	7	59	40	0	0	59	0.97
532451--532526	19	3.7	19	76	16	64	44	0	0	55	0.99
532451--532510	22	2.7	22	82	5	68	43	0	0	56	0.99
532475--532536	2	35.0	2	73	23	59	43	0	0	56	0.99
532459--532536	10	8.0	11	81	14	68	43	0	0	56	0.99
533790--533860	15	4.6	15	69	19	56	26	5	1	66	1.22
533825--533900	11	6.5	11	70	20	50	28	3	3	63	1.30
534766--534807	13	3.2	13	76	10	50	30	2	2	64	1.19
539718--539771	26	2.0	27	89	10	85	64	12	18	3	1.41
539759--539839	14	6.5	13	74	17	73	82	2	14	0	0.77
539774--539839	1	66.0	1	81	0	51	86	0	13	0	0.57
539774--539838	15	4.3	15	80	3	78	86	0	13	0	0.58
539755--539839	23	3.4	26	76	15	90	82	2	15	0	0.77
542120--542339	114	1.9	114	89	1	343	35	15	19	30	1.92
543291--543357	35	1.9	35	87	6	100	31	11	23	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544901--544998	22	4.5	22	92	2	171	34	11	14	39	1.81
544901--545001	43	2.3	44	94	1	177	35	10	14	38	1.82
545548--545918	184	2.0	186	94	1	647	31	14	14	39	1.86
545859--546499	75	8.5	76	94	1	1074	23	20	21	34	1.96
545859--546499	151	4.2	151	94	1	1088	23	20	21	34	1.96
546628--546675	3	15.3	3	78	8	51	41	0	0	58	0.98
546626--546681	16	3.5	16	77	18	62	44	0	0	55	0.99
546620--546665	22	2.1	22	88	8	67	47	0	0	52	1.00
546618--546700	28	2.9	28	79	13	80	46	0	0	53	1.00
547948--548018	15	4.6	15	69	19	56	26	5	1	66	1.22
547983--548058	11	6.5	11	70	20	50	28	3	3	63	1.30
552916--553114	105	1.9	106	88	5	303	27	23	22	27	1.99
567657--567718	33	1.9	33	93	3	108	17	8	33	40	1.79
567472--567955	237	2.0	236	89	4	731	23	11	26	37	1.90
567882--567955	32	2.3	32	95	0	130	9	10	37	41	1.73
568491--568536	18	2.8	16	83	6	56	28	30	4	36	1.76
577830--577896	34	2.0	34	88	5	100	32	2	7	56	1.42
579936--579961	2	13.0	2	100	0	52	50	0	0	50	1.00
581066--581092	13	2.1	13	100	0	54	25	0	37	37	1.57
583111--583154	22	2.0	22	90	0	70	20	43	15	20	1.88
583416--583474	20	3.0	20	87	0	73	15	18	22	44	1.87
584794--584841	18	2.7	18	93	0	87	27	45	12	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585382--585427	20	2.3	20	84	0	56	36	23	21	17	1.94
585393--585448	20	2.8	20	86	2	78	39	17	23	19	1.92
585421--585514	33	2.8	33	90	0	152	45	20	19	14	1.85
585470--585496	14	1.9	14	100	0	54	44	33	14	7	1.73
585451--585517	19	3.8	19	71	18	63	46	20	19	13	1.83
585529--585620	14	5.9	14	70	22	67	10	15	22	51	1.74
585524--585636	33	3.4	33	92	0	190	11	17	22	48	1.79
585507--585636	19	7.7	18	67	23	68	12	17	23	46	1.81
585621--585665	20	2.3	19	85	7	63	17	31	20	31	1.96
585632--585695	20	3.2	20	90	0	101	15	25	26	32	1.95
585683--585721	20	2.0	20	94	0	69	25	12	28	33	1.93
586069--586136	21	3.3	20	74	8	66	25	39	16	19	1.91
586059--586148	40	2.2	42	88	4	139	22	41	15	21	1.90
587645--587728	20	4.2	20	92	0	114	32	19	25	23	1.97
587656--587782	20	6.3	20	84	5	139	25	18	26	29	1.98
587709--587786	41	1.9	41	94	0	138	19	17	25	37	1.94
587709--587804	41	2.3	41	85	3	122	20	19	23	35	1.96
587772--587823	20	2.5	21	87	3	70	21	23	17	38	1.93
587834--587939	20	5.3	20	91	0	140	24	28	17	29	1.98
588100--588133	12	2.9	12	86	4	52	17	41	5	35	1.74
588687--588740	24	2.2	24	90	0	81	22	16	20	40	1.91
588909--588933	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597785--597935	7	22.1	7	95	4	274	0	29	56	14	1.39
597785--597935	54	2.8	54	96	3	277	0	29	56	14	1.39
603239--603272	17	2.0	17	94	0	59	11	0	55	32	1.36
597933--604560	7	969.9	7	91	6	10192	12	1	43	42	1.52

Tables:   1   2   3

The End!