genome.fa.s8674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008674.1 Hibiscus syriacus cultivar Beakdansim tig00111689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899125

Tables:   1   2   3   4   

This is table  1  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10737--10781	19	2.4	19	96	0	81	33	20	15	31	1.93
11566--11634	26	2.7	26	83	0	93	34	28	15	20	1.94
12729--12808	39	2.1	39	100	0	160	36	20	10	33	1.86
13756--13791	3	12.0	3	100	0	72	33	0	0	66	0.92
13959--14064	37	2.8	37	75	17	108	35	13	2	48	1.57
15523--15555	14	2.3	15	89	5	50	45	24	0	30	1.53
16173--16245	28	2.6	28	95	0	128	46	1	1	50	1.18
16185--16231	10	4.9	10	74	10	53	44	2	0	53	1.12
24302--24347	12	3.7	13	80	8	51	43	2	0	54	1.12
25517--25548	2	17.0	2	87	12	50	50	0	0	50	1.00
25517--25649	8	18.9	7	74	18	66	35	1	3	59	1.25
30121--30161	17	2.5	17	80	15	50	75	7	17	0	1.02
30125--30187	29	2.3	28	81	10	78	74	6	17	1	1.10
30087--30198	28	4.1	28	72	17	83	73	8	16	2	1.19
32202--32735	106	5.0	106	92	0	872	37	23	16	22	1.94
34666--34716	12	4.2	13	92	7	65	39	0	0	60	0.97
34678--34724	3	16.3	3	83	16	64	34	0	0	65	0.93
34795--34864	17	4.1	17	70	14	56	34	2	4	58	1.32
34976--35017	22	1.9	22	85	9	59	9	7	4	78	1.08
34992--35031	17	2.4	17	87	4	55	10	15	2	72	1.21
39233--39296	21	3.2	20	73	10	58	37	6	12	43	1.68
39219--39292	23	3.3	23	79	7	98	37	5	12	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39486--39516	14	2.2	14	94	0	53	48	29	6	16	1.70
39681--39725	2	22.0	2	95	4	81	48	0	2	48	1.13
40162--40198	15	2.4	15	95	4	65	51	5	2	40	1.39
40273--40343	7	10.3	7	73	3	54	49	29	0	21	1.50
40273--40343	14	5.1	14	79	3	72	49	29	0	21	1.50
40273--40349	41	1.9	40	89	2	118	49	27	0	23	1.50
40715--40744	13	2.3	13	100	0	60	53	6	0	40	1.27
40684--40734	20	2.4	21	74	9	59	45	5	7	41	1.57
41189--41247	17	3.3	19	83	9	63	47	6	6	38	1.57
41216--41249	9	3.9	9	84	7	52	55	5	0	38	1.24
41209--41247	17	2.2	18	95	4	71	51	5	2	41	1.38
41322--41392	14	5.1	14	75	3	63	49	28	0	22	1.50
41327--41359	13	2.4	14	85	5	50	45	27	0	27	1.54
41322--41398	41	1.9	40	86	2	109	49	25	0	24	1.51
41700--41726	13	2.1	13	100	0	54	44	0	0	55	0.99
41755--41784	13	2.3	13	100	0	60	53	6	0	40	1.27
41724--41774	20	2.4	21	74	9	59	45	5	7	41	1.57
40858--41898	550	1.9	542	95	2	1844	42	11	9	36	1.73
40326--42389	499	4.0	501	90	7	3243	42	11	9	36	1.73
42600--42646	14	3.7	14	71	26	50	51	4	0	44	1.21
42598--42647	23	2.1	24	96	3	93	48	4	0	48	1.20
42684--42718	11	3.3	11	84	8	54	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42919--42981	16	3.9	16	85	0	81	42	12	22	22	1.87
42915--42985	32	2.2	32	94	0	124	40	14	23	21	1.89
43251--43410	73	2.2	73	97	0	302	36	23	16	23	1.94
57006--57069	21	3.0	22	73	11	60	25	4	31	39	1.76
60151--60178	3	9.3	3	100	0	56	32	0	0	67	0.91
60109--60442	116	2.8	121	87	7	509	25	11	13	49	1.75
64422--64542	39	2.9	41	86	12	158	19	34	19	27	1.95
64401--64659	78	3.1	82	77	14	264	20	33	16	29	1.95
64401--64659	45	6.2	43	76	17	203	20	33	16	29	1.95
64522--64588	33	2.0	33	94	0	116	22	29	14	32	1.94
64555--64654	42	2.3	43	91	5	157	20	34	15	31	1.93
67007--67075	34	2.0	34	100	0	138	37	8	18	34	1.82
67198--67261	33	1.9	33	100	0	128	39	9	18	32	1.83
75699--75769	30	2.4	30	95	0	124	22	22	8	46	1.78
76061--76143	30	3.0	26	74	20	78	1	37	0	61	1.04
76066--76190	20	6.5	20	71	19	72	0	37	0	61	1.02
76072--76157	16	5.9	14	71	22	54	1	38	0	60	1.04
76078--76168	27	3.3	26	72	25	71	1	40	0	58	1.05
76128--76177	16	3.1	16	91	0	73	0	40	0	60	0.97
81565--81636	15	4.4	15	74	19	72	70	0	15	13	1.16
81567--81651	13	6.6	13	74	17	56	69	0	16	14	1.19
81565--81647	25	3.3	24	74	22	82	71	0	15	13	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82646--82703	30	2.0	29	86	10	82	41	8	15	34	1.78
83652--83725	30	2.5	31	80	6	89	32	4	22	40	1.73
83929--83964	18	2.0	18	88	0	54	25	5	19	50	1.69
85078--85165	36	2.4	36	88	0	131	25	18	30	26	1.98
85161--85253	42	2.2	42	84	0	114	29	16	19	35	1.93
85194--85253	21	2.9	21	73	9	68	25	16	20	38	1.93
98409--98487	23	3.4	23	92	3	124	11	21	15	51	1.74
99055--99092	12	2.8	13	88	11	51	34	2	0	63	1.09
99456--99572	15	7.5	15	79	15	112	47	0	1	51	1.11
99458--99529	29	2.4	30	93	2	119	52	0	0	47	1.00
99537--99572	14	2.5	14	95	4	63	38	0	0	61	0.96
99552--100181	32	22.4	32	67	29	352	36	0	10	52	1.37
99552--100198	54	12.1	54	94	2	1076	36	0	10	52	1.37
99606--99749	18	8.8	15	67	26	62	38	0	7	54	1.29
99629--100095	22	18.0	22	64	27	97	37	0	9	52	1.37
99660--99726	15	4.5	14	76	18	64	38	0	4	56	1.19
100107--100149	22	2.0	22	95	0	77	37	0	13	48	1.43
110671--110794	23	5.4	23	81	3	115	38	15	18	27	1.91
110671--110794	46	2.7	46	79	2	142	38	15	18	27	1.91
111954--112007	19	2.9	17	79	17	54	57	1	1	38	1.20
115260--115444	59	3.1	59	85	3	255	32	22	5	40	1.76
115564--115733	60	2.8	60	77	14	156	37	3	24	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123307--123342	4	8.8	4	87	6	54	0	25	0	75	0.81
127920--127972	26	2.0	26	100	0	106	62	0	11	26	1.29
134698--134740	18	2.5	17	78	10	52	58	2	2	37	1.24
140287--140362	32	2.4	32	79	0	80	38	14	14	32	1.87
143001--143040	2	20.0	2	100	0	80	50	0	0	50	1.00
147529--147567	17	2.3	17	86	8	53	7	25	0	66	1.18
158465--158517	23	2.3	23	77	6	63	39	7	13	39	1.73
159300--159338	20	2.0	20	85	5	53	38	2	0	58	1.12
159313--159352	21	2.0	21	85	5	55	40	0	0	60	0.97
169955--170105	74	2.0	74	100	0	302	27	16	22	33	1.96
171316--171378	30	2.1	30	93	0	108	41	25	4	28	1.75
175947--175994	25	1.9	25	95	0	87	66	8	0	25	1.19
176230--176258	14	2.1	14	93	6	51	24	0	10	65	1.23
186248--186485	121	2.0	121	92	4	399	36	26	5	30	1.80
192085--192229	36	4.1	36	81	7	161	19	20	20	40	1.91
192085--192229	72	2.0	71	84	6	186	19	20	20	40	1.91
192288--192373	36	2.4	36	90	0	127	19	26	20	32	1.97
193602--193629	10	2.8	10	100	0	56	50	17	0	32	1.47
195411--195436	12	2.2	12	100	0	52	7	30	30	30	1.85
195513--195597	29	2.9	29	94	0	152	11	36	30	21	1.89
195614--195759	33	4.4	33	79	12	118	11	32	30	24	1.91
195667--195698	14	2.3	14	94	0	55	9	31	34	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195686--195739	20	2.7	20	100	0	108	9	29	37	24	1.86
195687--195751	30	1.9	34	77	22	59	9	30	36	23	1.86
195648--195757	54	2.0	56	87	5	161	11	30	33	23	1.91
195686--195739	10	5.4	10	83	16	76	9	29	37	24	1.86
195796--195853	29	2.0	29	89	0	89	22	27	36	13	1.92
196075--196100	13	2.0	13	100	0	52	53	15	7	23	1.67
210607--210723	57	2.0	58	90	1	182	44	13	9	32	1.76
218662--218999	167	2.0	170	97	2	637	32	21	15	31	1.94
219143--219248	53	2.0	53	100	0	212	41	11	26	20	1.86
247604--247633	6	5.0	6	91	0	51	20	0	63	16	1.31

Tables:   1   2   3   4