genome.fa.s8674.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008674.1 Hibiscus syriacus cultivar Beakdansim tig00111689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899125

Tables:   1   2   3   4   

This is table  2  of  4  ( 396 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257887--257941	23	2.4	23	87	0	83	27	18	12	41	1.86
258454--258499	23	2.0	23	83	8	58	54	4	2	39	1.32
261826--261855	3	10.0	3	92	0	51	70	0	30	0	0.88
273220--273253	16	2.0	17	88	11	52	32	2	0	64	1.08
273235--273294	27	2.2	26	80	8	66	30	0	1	68	0.99
276975--277183	104	2.0	103	92	0	346	37	15	14	32	1.88
281608--281749	36	4.0	36	86	0	196	31	21	26	20	1.98
285633--285701	36	1.9	36	82	5	86	37	7	2	52	1.44
285690--285748	30	1.9	32	82	6	77	47	6	13	32	1.69
286892--286921	15	2.0	15	93	0	51	16	0	10	73	1.09
295324--295361	14	2.7	14	84	11	51	21	10	28	39	1.86
298125--298186	2	32.5	2	78	15	69	1	45	0	53	1.10
300023--300091	29	2.4	29	95	0	120	39	21	8	30	1.84
304246--304423	89	2.0	89	93	0	302	33	15	15	35	1.88
308867--309016	59	2.5	59	78	6	162	32	22	6	38	1.80
313201--313251	2	26.0	2	96	4	95	50	0	0	49	1.00
320495--320558	24	2.6	24	87	2	83	37	0	4	57	1.19
321268--321343	37	2.1	37	82	7	93	47	1	3	47	1.29
327883--327934	16	3.2	17	72	22	58	42	0	21	36	1.53
328810--328885	24	3.2	24	84	3	73	44	19	11	23	1.84
328827--328946	24	5.0	24	83	4	143	40	20	13	26	1.89
329985--330062	42	1.9	40	89	5	120	21	21	3	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331366--331397	7	4.4	7	92	7	55	25	28	34	12	1.92
331357--331413	15	3.8	15	88	9	73	22	28	35	14	1.93
331375--331414	13	2.9	14	88	7	55	22	25	37	15	1.93
332384--332513	65	2.0	66	95	1	235	33	11	6	48	1.64
334518--334583	15	4.2	15	73	11	53	1	36	1	60	1.15
337191--337280	12	7.4	12	76	16	71	10	36	3	50	1.53
337189--337280	18	5.1	19	64	7	57	10	36	3	48	1.54
337166--337280	36	3.2	36	92	4	187	11	36	3	48	1.56
346474--346498	11	2.3	11	100	0	50	28	0	8	64	1.22
346875--347028	79	2.0	78	94	5	278	40	13	15	29	1.86
350023--350083	29	2.1	30	84	9	81	45	13	21	19	1.84
350552--350600	23	2.1	23	84	0	62	40	10	18	30	1.84
350556--350607	23	2.3	23	79	0	59	38	13	19	28	1.89
362570--362660	45	2.0	45	97	0	173	32	13	8	45	1.74
364088--364266	90	2.0	90	89	0	277	38	13	13	34	1.84
372029--372081	25	2.1	26	85	3	72	18	0	26	54	1.44
374911--374967	30	1.9	30	100	0	114	19	17	36	26	1.94
388196--388233	20	1.9	20	84	10	51	42	0	5	52	1.24
389170--389282	52	2.2	52	83	3	147	33	23	7	35	1.82
390094--390153	15	3.9	15	80	4	57	45	1	1	51	1.21
390106--390161	15	3.7	15	80	4	60	50	0	1	48	1.11
394535--394649	60	1.9	60	89	0	176	36	17	10	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394555--394650	29	3.2	28	64	16	68	39	17	9	33	1.82
395333--395360	11	2.5	11	100	0	56	82	7	0	10	0.85
405809--405856	22	2.2	22	96	0	87	64	0	14	20	1.28
408645--408693	15	3.1	15	80	13	55	51	6	0	42	1.27
409066--409099	15	2.3	15	85	5	52	52	0	0	47	1.00
409540--409605	33	2.0	33	100	0	132	27	18	27	27	1.98
420567--420609	22	2.0	22	85	0	59	46	11	32	9	1.72
423086--423200	60	1.9	60	85	3	160	42	4	20	32	1.72
433743--433797	6	9.2	6	95	0	101	34	0	49	16	1.46
434674--434701	2	14.0	2	100	0	56	50	0	0	50	1.00
441200--441305	29	3.7	29	98	0	203	14	33	27	24	1.94
441654--441692	2	19.5	2	100	0	78	51	0	0	48	1.00
443339--443378	20	2.0	20	85	4	55	32	5	0	62	1.17
445289--445353	33	2.0	33	93	0	112	33	12	23	30	1.91
451385--451562	49	3.6	49	95	1	304	32	15	25	25	1.96
451385--451590	49	4.2	49	91	1	288	32	16	25	25	1.96
455215--455249	16	2.2	16	94	0	61	20	28	14	37	1.91
455215--455264	16	3.1	16	88	0	55	20	24	14	42	1.88
455526--455575	23	2.1	24	92	3	84	50	0	2	48	1.12
456170--456616	233	1.9	235	84	4	609	44	16	12	26	1.83
456786--456899	55	2.1	55	96	0	210	35	17	14	33	1.90
457528--457574	24	1.9	25	86	4	69	57	4	0	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457521--457705	31	5.8	30	72	21	135	50	4	3	41	1.38
457584--457652	14	4.9	15	75	16	58	46	2	5	44	1.42
457611--457699	15	5.6	15	69	17	54	49	4	3	42	1.39
457606--457699	34	3.0	29	73	18	89	48	4	4	42	1.42
457586--457676	43	2.2	40	86	7	119	47	4	5	42	1.46
457688--457789	22	4.7	22	75	11	86	49	8	5	36	1.58
457717--457769	21	2.5	21	87	0	79	47	5	7	39	1.56
457812--457904	20	4.7	20	71	24	72	44	5	7	43	1.55
457895--457968	37	2.1	36	84	5	96	40	12	8	39	1.72
457800--457957	57	2.7	58	81	11	189	43	9	7	39	1.66
458075--458108	15	2.4	14	90	9	52	38	0	11	50	1.39
458315--458360	7	6.6	7	84	0	65	15	0	34	50	1.44
458413--458510	2	49.0	2	68	18	53	45	8	1	44	1.40
458446--458503	24	2.3	26	82	8	75	41	10	1	46	1.48
458413--458573	89	1.9	83	86	10	225	44	6	1	46	1.40
458546--458637	15	6.1	15	67	21	59	43	6	4	45	1.49
458621--458656	18	2.1	18	94	5	65	50	0	5	44	1.25
458735--458784	15	3.2	16	80	11	59	28	6	4	62	1.37
468461--468509	2	25.0	2	95	4	91	48	0	0	51	1.00
473792--473945	37	4.1	36	70	15	105	28	14	14	42	1.85
473746--473884	75	1.9	75	80	8	167	29	15	15	39	1.88
473752--474101	39	8.9	39	74	13	229	27	17	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473821--474072	126	2.0	126	84	6	332	28	17	17	36	1.93
474128--474451	39	9.0	37	73	17	188	27	18	14	39	1.90
474193--474443	103	2.4	103	92	2	412	28	18	14	38	1.91
474316--474506	66	2.9	67	85	5	253	27	20	13	38	1.90
474449--474577	36	3.6	35	83	4	152	24	21	12	41	1.88
475001--475199	44	4.6	44	74	8	156	33	21	19	26	1.97
474994--475673	133	5.1	133	87	1	881	31	20	18	29	1.97
475001--475673	267	2.5	265	84	4	887	31	20	19	28	1.97
477276--477312	2	19.0	2	94	5	67	48	0	0	51	1.00
480875--480921	24	2.0	24	87	4	69	25	4	10	59	1.49
480881--480925	14	3.5	14	71	22	53	22	6	11	60	1.54
481012--481073	24	2.6	24	79	7	72	58	3	3	35	1.31
481459--481842	191	2.0	193	98	1	754	38	10	11	39	1.76
492762--492804	18	2.4	19	80	11	54	41	4	0	53	1.21
493191--493219	2	14.5	2	100	0	58	51	0	0	48	1.00
493860--493914	27	2.0	27	92	0	92	45	5	18	30	1.72
494380--494424	21	2.1	22	95	4	83	26	31	24	17	1.97
494457--494513	21	2.6	23	70	16	57	40	17	1	40	1.60
495185--495277	31	2.9	31	75	13	91	34	21	18	25	1.96
504228--504293	29	2.2	29	83	2	87	30	30	19	19	1.97
504285--504380	32	3.0	32	78	13	117	35	18	16	29	1.93
505567--505611	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508754--508816	29	2.1	29	88	2	90	28	30	22	19	1.98
508805--508902	31	3.2	30	78	13	117	32	18	19	29	1.96
510099--510143	21	2.1	21	87	0	63	15	24	28	31	1.96
526540--526587	23	2.1	23	88	0	69	35	12	18	33	1.89
527338--527400	23	2.7	23	87	0	81	38	19	4	38	1.73
528489--528531	20	2.3	18	85	14	61	20	16	11	51	1.75
528777--528814	20	1.9	20	84	10	51	28	5	10	55	1.56
531882--532233	174	2.1	169	96	3	643	38	15	14	31	1.87
535410--535484	29	2.6	29	93	2	125	16	26	37	20	1.93
540165--540211	21	2.1	23	84	11	62	44	4	6	44	1.49

Tables:   1   2   3   4