Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008674.1 Hibiscus syriacus cultivar Beakdansim tig00111689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899125

Tables:   1   2   3   4   

This is table  4  of  4  ( 396 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
840700--841751
428
2.5
429
97
1
1994
39
8
12
39
1.73
842182--842229
23
2.1
23
84
0
60
37
6
16
39
1.74
842616--842994
182
2.1
181
92
2
618
29
16
11
41
1.84
842819--843156
162
2.1
162
94
0
586
31
16
10
41
1.83
842642--843338
344
2.0
344
92
1
1166
29
16
11
42
1.83
842981--843415
182
2.4
182
93
0
726
29
15
11
43
1.83
843286--843638
112
3.2
111
91
0
544
25
15
13
45
1.82
843545--843726
91
2.0
90
90
3
285
25
12
12
49
1.75
851463--851510
24
1.9
26
83
8
64
39
10
20
29
1.86
852715--852754
2
20.0
2
100
0
80
50
0
0
50
1.00
856634--856677
13
3.1
14
83
9
54
45
0
0
54
0.99
862442--862510
23
3.0
23
85
2
86
55
11
20
13
1.68
862674--862726
24
2.3
24
80
6
65
28
5
9
56
1.54
878895--878966
20
3.6
20
88
0
117
44
26
12
16
1.83
878954--879081
19
6.7
19
87
3
168
36
20
10
32
1.86
879068--879118
18
2.8
18
96
0
93
27
17
15
39
1.90
879151--879213
27
2.3
27
100
0
126
39
33
4
22
1.75
879914--879947
12
2.8
12
90
0
50
55
29
0
14
1.40
880073--880126
24
2.2
24
93
0
90
20
18
20
40
1.91
882636--882683
25
2.0
23
92
8
78
25
6
22
45
1.75
883069--883105
18
2.1
18
94
0
65
35
5
8
51
1.55
883061--883113
24
2.2
24
82
0
61
39
3
9
47
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
885208--885248
21
2.0
21
85
0
55
21
14
36
26
1.93
885449--885490
4
10.5
4
84
0
57
69
4
0
26
1.08
886874--886980
34
3.5
33
80
19
149
32
27
0
40
1.57
886916--886968
26
2.0
27
92
7
92
32
22
0
45
1.53
888600--888655
22
2.7
22
75
10
64
19
23
33
23
1.97
896071--896133
20
3.5
20
67
24
66
7
12
28
50
1.68
896085--896118
14
2.4
14
80
0
50
5
11
29
52
1.61
896105--896144
20
2.0
20
85
0
53
15
12
22
50
1.77
896480--896531
22
2.4
22
96
0
95
17
19
44
19
1.87
896681--896743
20
3.2
20
86
4
101
19
15
25
39
1.91
896692--896756
19
3.4
19
83
8
87
16
13
27
41
1.87
896681--896756
39
1.9
39
94
5
136
17
15
26
40
1.89
896750--896836
20
4.3
20
75
4
77
26
16
24
33
1.95
898338--898376
15
2.5
16
83
8
53
66
0
2
30
1.05

Tables:   1   2   3   4

The End!