genome.fa.s8689.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008689.1 Hibiscus syriacus cultivar Beakdansim tig00111715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  959342

Tables:   1   2   3   4   

This is table  1  of  4  ( 476 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1548--1606	29	2.0	29	100	0	118	23	13	13	49	1.78
7606--7634	3	9.7	3	100	0	58	0	31	0	68	0.89
12636--12667	2	16.0	2	100	0	64	50	0	0	50	1.00
15484--15678	46	4.3	46	88	1	277	34	21	5	38	1.77
15788--15908	59	2.1	59	87	0	170	28	24	17	28	1.97
16843--16901	30	1.9	31	82	3	75	33	18	10	37	1.85
21339--21365	13	2.1	13	100	0	54	22	22	29	25	1.99
28202--28300	21	4.8	20	73	11	85	22	20	20	37	1.95
28221--28290	19	3.5	19	72	12	68	21	20	18	40	1.92
28202--28300	42	2.4	42	89	3	157	22	20	20	37	1.95
28434--28472	6	6.7	6	91	2	62	30	48	17	2	1.61
29496--29540	21	2.1	21	95	0	81	35	28	17	17	1.93
30463--30529	19	3.7	18	75	17	59	41	0	1	56	1.08
30453--30529	34	2.4	32	83	12	95	38	0	1	59	1.06
30669--30722	17	3.2	17	72	0	54	31	0	3	64	1.11
32247--32294	21	2.3	21	85	0	60	25	39	12	22	1.89
32298--32370	21	3.5	21	88	7	112	17	34	27	20	1.95
32900--32989	33	2.7	33	84	3	108	55	2	3	38	1.29
32891--32996	34	3.2	33	80	8	115	54	3	3	37	1.36
36613--36653	2	20.5	2	100	0	82	48	0	0	51	1.00
45480--45525	21	2.2	21	84	0	56	50	2	2	45	1.26
46936--46990	25	2.2	25	96	0	101	20	20	3	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58264--58315	23	2.2	24	90	10	81	28	3	1	65	1.21
58411--58537	13	9.1	13	69	27	52	19	7	3	70	1.25
59999--60075	17	4.3	17	70	14	57	67	2	0	29	1.04
60877--60932	21	2.7	21	88	2	87	28	12	21	37	1.90
76027--76051	2	12.5	2	100	0	50	52	0	0	48	1.00
82374--82413	20	2.0	20	85	0	53	47	0	0	52	1.00
82372--82434	30	2.1	31	88	8	94	47	1	0	50	1.10
82605--82645	16	2.5	17	84	4	57	19	21	17	41	1.90
92166--92190	13	1.9	13	100	0	50	16	0	0	84	0.63
95084--95128	16	2.6	16	86	10	54	62	8	15	13	1.54
95074--95128	17	3.4	16	79	16	60	61	7	14	16	1.54
101123--101154	12	2.7	12	100	0	64	18	0	28	53	1.45
104098--104188	26	3.3	26	70	16	83	29	17	14	38	1.89
104098--104212	58	2.0	58	87	0	167	27	17	14	40	1.89
104445--104501	14	4.1	14	75	8	53	47	0	1	50	1.11
104512--104562	22	2.5	21	75	12	52	35	5	0	58	1.22
110094--110185	43	2.1	43	83	0	112	29	20	14	35	1.92
118044--118070	6	4.5	6	100	0	54	0	0	14	85	0.61
118366--118399	17	2.0	17	100	0	68	35	11	5	47	1.65
119393--119430	2	19.0	2	100	0	76	50	0	0	50	1.00
120913--120965	16	3.2	16	82	10	61	33	7	26	32	1.84
124258--124303	22	2.1	22	95	0	83	23	10	8	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124515--124546	16	2.0	16	100	0	64	31	43	12	12	1.80
124932--124973	21	2.0	22	85	4	59	35	0	2	61	1.09
125022--125199	89	2.0	89	95	2	322	28	26	18	26	1.98
126330--126387	3	19.0	3	79	10	64	0	34	3	62	1.12
127426--127477	19	2.6	20	81	9	70	44	3	0	51	1.19
147710--148039	176	1.9	177	82	4	425	50	10	8	31	1.66
165871--165903	12	2.8	12	100	0	66	42	9	15	33	1.78
166245--166329	17	5.0	17	94	0	152	31	34	16	17	1.93
166370--166503	71	1.9	70	95	1	241	32	30	5	31	1.80
168095--168126	16	2.0	16	100	0	64	18	18	43	18	1.88
174461--174521	31	2.0	31	83	6	79	45	3	6	44	1.46
181162--181516	175	2.0	175	99	0	701	37	16	17	28	1.91
194857--195598	371	2.0	371	97	0	1412	27	17	22	32	1.96
199789--199849	20	3.0	20	95	0	104	37	9	16	36	1.82
201349--201377	13	2.2	13	100	0	58	20	17	20	41	1.90
205097--205137	20	2.0	20	95	0	73	36	7	19	36	1.80
213472--213533	31	2.0	31	93	0	106	35	17	32	14	1.90
215105--215156	19	2.7	19	93	0	86	34	17	25	23	1.96
215167--215222	20	2.8	19	91	5	85	32	21	21	25	1.98
215996--216101	23	4.6	23	83	0	131	18	25	25	30	1.98
215987--216101	46	2.5	46	94	0	194	18	25	25	31	1.97
220398--220465	23	3.0	23	80	0	82	20	25	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222615--222663	16	3.0	16	84	3	53	36	16	20	26	1.93
228576--228918	157	2.2	153	87	3	479	26	15	7	50	1.69
229135--229183	20	2.4	21	83	6	66	40	2	4	53	1.32
229169--229221	18	2.8	19	80	13	56	56	0	1	41	1.10
229591--229631	21	2.0	21	85	0	55	60	2	0	36	1.10
238439--238475	2	18.5	2	100	0	74	48	0	51	0	1.00
238915--238942	14	2.0	14	100	0	56	50	7	0	42	1.30
239550--239584	2	18.0	2	94	5	63	51	0	0	48	1.00
242348--242372	4	6.2	4	100	0	50	52	24	0	24	1.48
242764--242803	2	20.0	2	100	0	80	50	0	0	50	1.00
249738--249789	22	2.4	21	83	3	68	69	7	0	23	1.14
268847--268875	15	1.9	15	100	0	58	58	0	0	41	0.98
273498--273590	31	3.0	31	91	0	150	31	25	22	20	1.98
274540--274597	20	2.6	22	86	10	75	25	22	22	29	1.99
276093--276121	13	2.2	13	100	0	58	27	10	0	62	1.28
276978--277200	105	2.1	105	84	0	286	39	22	15	22	1.92
277340--277503	53	3.1	53	63	13	138	32	20	8	38	1.83
277341--277554	106	2.0	106	98	0	410	32	21	7	38	1.81
278775--278847	22	3.4	22	90	3	112	23	30	19	27	1.98
279589--279639	26	1.9	27	84	4	68	47	9	0	43	1.36
280473--280530	18	3.2	18	82	0	71	48	12	6	32	1.67
280499--280537	18	2.2	18	90	0	60	51	7	5	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281372--281430	27	2.2	27	96	0	109	47	16	5	30	1.69
283090--283121	15	2.0	17	88	11	50	43	0	0	56	0.99
285067--285152	29	3.0	29	93	3	147	13	34	30	20	1.92
285158--285205	23	2.1	23	100	0	96	41	16	27	14	1.87
285234--285318	29	2.9	29	91	0	143	14	35	29	21	1.92
285324--285381	23	2.5	23	88	0	80	13	36	27	22	1.92
285369--285422	20	2.7	20	91	0	90	11	29	33	25	1.91
285369--285422	10	5.4	9	79	16	54	11	29	33	25	1.91
285479--285536	29	2.0	29	86	0	80	22	25	37	13	1.91
289660--290574	452	2.0	452	98	0	1778	39	9	13	37	1.78
293648--293713	23	2.8	24	76	15	66	51	6	7	34	1.55
294720--294781	32	2.0	33	84	9	85	35	1	1	61	1.16
309375--309473	21	4.8	20	72	6	72	36	23	19	21	1.95
309441--309593	20	7.7	20	88	3	75	33	27	19	18	1.96
309441--309592	40	3.8	40	88	1	135	33	27	19	19	1.96
309441--309593	60	2.6	59	86	3	207	33	27	19	18	1.96
309972--310042	33	2.2	33	94	0	124	11	23	16	47	1.79
310122--310228	21	5.6	20	73	17	102	46	18	21	13	1.83
310183--310239	14	3.7	14	75	20	60	43	22	24	8	1.81
310176--310255	33	2.4	33	95	0	142	47	22	21	8	1.78
310251--310315	19	3.7	19	76	19	77	12	23	20	44	1.84
310275--310329	14	3.6	14	73	21	56	9	23	21	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310256--310337	33	2.5	33	97	0	155	10	23	18	47	1.80
310314--310378	21	3.1	21	82	4	96	10	26	15	47	1.78
312063--312471	93	4.4	93	98	0	782	22	13	18	45	1.84
312587--312643	14	3.7	14	72	20	51	43	24	22	8	1.81
312569--312662	33	2.8	33	90	1	134	44	26	19	9	1.81
312601--312678	19	4.4	19	79	15	94	46	28	17	7	1.76
312674--312827	19	8.6	19	73	14	139	11	20	22	45	1.82
312696--312752	14	3.7	14	75	20	51	10	22	22	43	1.84
312679--312809	33	3.8	33	84	9	181	9	21	22	46	1.80
314750--314785	14	2.6	14	95	0	63	33	0	22	44	1.53

Tables:   1   2   3   4