genome.fa.s8689.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008689.1 Hibiscus syriacus cultivar Beakdansim tig00111715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  959342

Tables:   1   2   3   4   

This is table  2  of  4  ( 476 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314892--314969	19	4.4	19	81	15	112	46	17	21	14	1.84
314929--314983	14	3.6	14	73	21	56	45	20	23	10	1.82
314910--314988	33	2.4	33	100	0	158	44	18	24	12	1.85
315022--315076	14	3.6	14	73	21	56	10	23	20	45	1.82
314984--315272	53	5.5	49	73	19	223	13	21	17	46	1.83
315002--315286	33	8.2	33	77	15	299	13	22	17	46	1.83
314978--315286	105	2.9	106	85	11	472	13	22	17	45	1.84
317570--317594	12	2.1	12	100	0	50	0	28	0	72	0.86
317769--317815	24	2.0	24	87	8	69	38	21	14	25	1.92
318502--318692	20	9.6	20	85	4	224	20	17	25	35	1.95
318679--318730	20	2.6	20	81	6	61	13	19	25	42	1.87
318563--318729	60	2.8	60	81	3	167	19	18	26	35	1.95
318718--318800	21	4.0	20	73	7	76	26	18	21	33	1.96
328137--328176	21	1.9	21	85	10	55	35	10	2	52	1.48
330614--330662	23	2.1	23	84	0	62	36	18	8	36	1.81
330690--330763	23	3.2	23	92	0	112	35	18	9	36	1.84
330614--330841	110	2.1	110	91	0	366	34	14	10	40	1.80
330713--330937	87	2.6	87	89	0	351	33	14	11	40	1.81
330809--330853	23	2.0	23	86	0	63	37	11	11	40	1.76
330595--330982	197	2.0	197	94	0	677	34	13	11	41	1.80
330887--330960	23	3.2	23	94	0	121	33	20	9	36	1.85
335073--335121	20	2.5	20	93	3	82	20	22	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340979--341018	19	2.1	19	85	0	53	47	15	2	35	1.58
356603--356945	177	1.9	180	97	2	656	35	16	15	32	1.90
360344--360389	22	2.0	23	95	4	85	17	28	17	36	1.92
376590--376636	19	2.5	19	100	0	94	29	17	6	46	1.72
379131--379205	25	3.0	24	75	16	82	54	10	13	21	1.68
380146--380192	17	2.6	17	86	6	67	14	4	34	46	1.64
380959--381055	17	5.7	17	97	0	185	37	11	0	51	1.38
381428--381620	61	3.2	59	75	5	163	44	9	9	35	1.71
382243--382291	2	24.5	2	100	0	98	51	0	0	48	1.00
382387--382776	41	9.6	40	75	6	345	28	18	18	34	1.94
382405--382804	82	4.9	82	84	3	450	28	18	18	35	1.95
384934--384970	19	1.9	19	88	0	56	10	24	32	32	1.90
386930--387146	42	5.1	42	80	8	183	25	24	18	31	1.98
386930--387150	43	5.2	42	81	9	261	24	24	18	32	1.97
388126--388236	29	3.8	28	67	11	69	38	5	18	36	1.74
393386--393430	24	2.0	23	82	8	56	62	0	6	31	1.21
394838--394863	8	3.2	8	100	0	52	76	0	0	23	0.78
408865--408905	19	2.1	19	90	4	64	46	4	14	34	1.66
410798--410834	16	2.3	17	86	9	51	21	2	0	75	0.92
422693--422742	13	3.8	13	78	5	55	34	0	0	66	0.92
422718--422744	14	1.9	14	100	0	54	29	0	0	70	0.88
423487--423663	80	2.2	80	94	1	311	46	1	3	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423566--423610	20	2.2	21	88	4	65	42	0	0	57	0.98
433977--434025	25	2.0	25	84	8	64	63	6	2	28	1.30
441128--441167	16	2.3	18	87	12	57	55	5	2	37	1.35
444737--444847	29	3.7	29	83	9	125	23	29	32	14	1.94
444741--444858	61	1.9	61	81	6	141	21	32	33	13	1.92
445211--445246	6	6.2	6	87	6	56	16	0	44	38	1.48
445205--445243	11	3.5	11	86	6	60	17	0	41	41	1.50
445508--445541	15	2.2	16	94	5	61	38	0	5	55	1.24
447695--447867	49	3.3	50	79	15	206	44	12	1	42	1.49
447792--447878	21	4.3	21	67	19	67	42	12	1	43	1.50
447745--447878	60	2.2	60	92	1	225	43	13	1	41	1.53
447952--447999	14	3.6	14	81	16	66	47	16	0	35	1.47
447951--448420	25	19.3	25	67	23	107	46	10	0	42	1.44
447952--448048	14	6.7	14	74	15	65	50	11	0	38	1.38
447978--448093	48	2.4	49	91	5	186	49	8	0	42	1.33
448128--448154	10	2.7	10	100	0	54	40	18	0	40	1.51
447967--448333	166	2.2	168	94	2	641	47	10	0	41	1.41
448138--448247	48	2.3	49	95	1	195	46	10	0	42	1.39
448186--448333	60	2.5	60	92	1	253	45	12	0	41	1.42
448290--448498	38	5.2	40	76	15	187	42	9	2	45	1.48
448292--448411	26	4.7	26	79	10	122	42	9	2	45	1.49
448356--448545	87	2.2	87	93	2	321	44	8	2	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448438--448490	26	2.0	26	100	0	106	43	3	3	49	1.38
448741--448775	17	2.0	18	94	5	63	37	5	0	57	1.23
452067--452108	21	2.0	21	90	4	66	54	14	0	30	1.40
452395--452456	28	2.1	30	94	5	110	56	12	0	30	1.37
452562--452594	15	2.3	15	89	5	50	3	24	0	72	0.98
452882--452926	23	2.0	23	100	0	90	31	26	20	22	1.98
452941--452986	22	2.1	22	95	0	83	21	17	36	23	1.94
453020--453078	29	2.0	29	96	0	109	16	18	40	23	1.91
453098--453167	33	2.1	33	91	0	113	11	15	45	27	1.80
455386--455418	8	4.1	8	100	0	66	27	12	24	36	1.91
455562--455864	149	2.0	148	92	0	498	26	14	21	36	1.93
455844--455886	22	2.0	22	85	0	59	23	25	25	25	2.00
460833--461135	149	2.0	148	93	0	516	26	15	21	36	1.93
461115--461157	22	2.0	22	85	0	59	23	25	25	25	2.00
466874--466995	37	3.2	36	69	19	93	41	5	9	43	1.60
467023--467060	13	2.8	14	85	14	53	44	7	0	47	1.32
467415--467490	39	1.9	40	83	2	100	44	0	26	28	1.54
467746--467865	2	60.0	2	68	23	67	40	7	1	50	1.41
467725--467865	32	4.8	30	72	24	99	39	7	3	49	1.49
467751--467865	22	5.4	21	77	18	107	40	7	1	50	1.42
467751--467865	42	2.8	42	82	11	148	40	7	1	50	1.42
467884--467934	16	3.0	17	82	8	68	45	1	11	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467968--468006	16	2.4	17	86	4	53	41	2	2	53	1.28
468728--468761	2	17.5	2	87	6	52	47	0	2	50	1.16
469323--469709	187	2.1	186	97	0	720	36	14	21	27	1.92
475813--475867	23	2.4	23	100	0	110	3	25	25	45	1.70
484034--484106	6	11.3	6	80	16	60	58	0	0	41	0.98
484048--484085	2	20.5	2	84	15	55	52	0	0	47	1.00
484488--484681	97	2.0	96	86	1	271	34	17	14	34	1.90
484595--484989	113	3.5	113	89	0	583	31	18	11	37	1.88
486086--486129	23	1.9	23	95	0	79	27	27	20	25	1.99
486145--486190	22	2.1	22	95	0	83	21	17	36	23	1.94
486232--486274	22	2.0	22	95	0	77	23	18	32	25	1.97
486309--486397	34	2.9	30	82	12	117	15	19	39	25	1.91
486387--486456	33	2.1	33	94	0	122	11	17	45	25	1.81
491530--491651	37	3.2	36	69	19	93	41	5	9	43	1.60
491679--491716	13	2.8	14	85	14	53	44	7	0	47	1.32
492073--492148	39	1.9	40	83	2	100	44	0	26	28	1.54
492404--492523	2	60.0	2	68	23	67	40	7	1	50	1.41
492383--492465	32	2.7	31	83	12	91	39	6	4	49	1.49
492409--492523	22	5.3	21	76	17	96	40	7	1	50	1.42
492541--492586	18	2.8	16	81	12	56	43	2	13	41	1.55
493383--493416	2	17.5	2	87	6	52	47	0	2	50	1.16
493978--494364	187	2.1	186	97	0	720	36	14	21	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500465--500519	23	2.4	23	100	0	110	3	25	25	45	1.70
501675--501731	19	3.0	19	76	23	66	31	19	35	14	1.91
502145--502177	16	2.0	17	94	5	59	36	6	21	36	1.78
522733--522924	94	2.0	98	90	4	311	21	15	19	42	1.88
526252--526414	65	2.5	66	84	3	206	26	15	26	31	1.96
526362--526412	19	2.7	19	79	8	61	25	13	35	25	1.93
527078--527121	18	2.5	17	82	7	61	54	27	0	18	1.44
527089--527125	18	2.0	19	94	5	67	59	27	0	13	1.35
532869--532908	21	1.9	21	90	10	64	37	10	0	52	1.35
534857--534983	64	2.0	65	89	4	195	27	16	24	31	1.96

Tables:   1   2   3   4