Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008703.1 Hibiscus syriacus cultivar Beakdansim tig00111742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1275178

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 639 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1221160--1221216
20
2.7
21
84
13
73
31
0
3
64
1.10
1228259--1228297
20
2.0
20
85
10
53
25
20
25
28
1.99
1233451--1233518
20
3.4
20
81
4
66
19
20
25
35
1.96
1232251--1234035
900
2.0
900
98
0
3435
33
15
23
27
1.95
1236125--1236204
2
40.0
2
100
0
160
50
0
0
50
1.00
1237164--1237207
18
2.4
18
100
0
88
25
4
20
50
1.67
1249098--1249127
15
2.0
15
93
0
51
13
10
6
70
1.34
1249109--1249147
10
3.8
10
86
6
60
10
5
7
76
1.13
1249109--1249149
21
2.0
21
100
0
82
9
4
7
78
1.10
1249248--1249336
24
3.7
24
73
11
83
44
11
17
25
1.82
1249248--1249335
23
3.7
23
72
7
77
45
11
18
25
1.82
1251803--1251862
14
4.0
14
77
16
50
25
1
1
71
1.04
1252349--1252395
2
23.5
2
100
0
94
48
0
0
51
1.00
1252458--1253279
415
2.0
412
85
3
1125
48
6
13
32
1.67
1253494--1253631
2
68.0
2
67
24
51
47
5
2
44
1.39
1253448--1253505
25
2.5
23
81
10
73
48
3
8
39
1.51
1253469--1253566
37
2.5
38
80
14
119
48
4
6
40
1.47
1253470--1253577
37
3.0
35
77
17
105
48
4
5
41
1.47
1253440--1253631
29
6.2
32
72
20
108
47
5
4
43
1.45
1253660--1253740
20
3.9
21
75
19
73
50
3
6
39
1.45
1253681--1253811
8
17.7
7
69
27
51
52
3
6
37
1.44
1253660--1254070
22
19.0
22
69
22
159
51
3
9
36
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1253868--1254070
8
27.0
8
74
21
149
54
1
8
35
1.42
1253877--1254070
44
4.6
43
78
16
217
54
2
8
35
1.42
1253695--1254228
259
2.1
259
96
0
971
50
2
10
35
1.53
1253868--1254057
17
11.9
16
69
26
120
54
2
8
35
1.43
1254149--1254221
7
10.0
7
78
10
58
53
0
9
36
1.34
1254127--1254224
8
12.9
8
73
18
84
54
1
9
35
1.39
1254136--1254221
23
3.9
22
86
6
129
54
1
9
34
1.40
1254160--1254224
30
2.1
31
88
8
98
55
0
7
36
1.29
1254255--1254283
2
14.5
2
100
0
58
48
0
0
51
1.00
1256982--1257015
11
2.8
13
82
17
54
26
26
14
32
1.95
1260983--1261082
3
33.7
3
88
6
150
36
2
0
62
1.07
1273810--1273862
8
6.6
8
80
8
63
86
0
11
1
0.64
1273820--1273862
18
2.3
18
96
4
77
88
0
11
0
0.52
1273810--1273855
10
4.4
10
82
17
58
86
0
10
2
0.64
1273807--1273863
6
8.4
7
78
18
59
84
0
14
1
0.71
1274189--1274232
19
2.5
19
89
10
67
31
9
9
50
1.65
1275012--1275174
83
2.0
81
96
2
299
30
14
18
36
1.91

Tables:   1   2   3   4   5   6

The End!