genome.fa.s8704.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008704.1 Hibiscus syriacus cultivar Beakdansim tig00111743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  516901

Tables:   1   2   3   

This is table  2  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213839--213878	21	1.9	21	90	10	64	55	0	0	45	0.99
215238--215271	2	17.5	2	93	6	61	50	0	0	50	1.00
218543--218587	24	1.9	23	86	4	63	22	6	0	71	1.09
219834--219922	2	45.0	2	70	22	55	42	7	0	49	1.32
219979--220030	17	3.2	17	75	5	54	25	5	1	67	1.23
221938--221996	21	2.8	21	86	0	82	33	20	15	30	1.93
227341--227402	2	32.0	2	88	6	92	48	3	0	48	1.17
228478--228515	2	19.5	2	83	5	51	50	5	0	44	1.24
229046--229986	105	9.0	105	88	2	1238	24	19	24	32	1.98
241224--241315	27	3.5	26	73	16	66	73	3	8	14	1.19
241362--241386	4	6.2	4	100	0	50	76	0	0	24	0.80
241679--241760	2	42.0	2	91	4	132	48	2	0	48	1.14
242176--242239	32	2.0	32	93	0	110	7	35	35	20	1.82
242182--242250	32	2.2	32	86	0	93	7	37	36	18	1.79
252330--252392	33	1.9	33	83	6	83	53	0	0	46	1.00
252281--252403	17	6.7	18	68	21	60	54	0	2	43	1.13
253296--253352	29	2.0	29	86	6	80	19	0	5	75	0.99
253405--253556	76	2.0	76	97	0	286	39	21	20	18	1.93
254388--254435	25	1.9	25	83	8	62	70	2	10	16	1.24
255786--255849	3	22.0	3	73	17	55	67	0	0	32	0.91
256185--256243	28	2.1	28	90	0	91	33	11	15	38	1.84
256213--256293	35	2.3	35	91	2	128	34	9	17	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256277--256441	67	2.5	66	82	3	188	36	12	20	30	1.90
256636--256835	106	1.9	106	88	2	303	22	20	24	33	1.97
256754--256898	63	2.3	63	89	0	209	24	17	26	32	1.97
256652--257004	169	2.1	169	86	0	499	23	18	25	33	1.97
256817--257374	106	5.3	106	98	0	1071	22	17	25	33	1.96
262442--262494	22	2.4	22	81	6	63	71	0	0	28	0.86
262466--262506	3	14.3	3	80	19	52	65	0	0	34	0.93
262442--262506	22	3.0	21	78	10	60	69	0	0	30	0.89
265926--265972	14	3.4	14	74	11	51	34	2	0	63	1.06
266576--266613	20	1.9	19	94	5	67	36	10	28	23	1.88
271131--271164	16	2.1	16	94	0	59	32	26	8	32	1.87
271593--271664	37	2.0	36	91	5	119	47	15	5	31	1.68
271598--271684	35	2.4	36	84	5	106	42	16	9	32	1.79
271808--271887	38	2.1	37	84	9	99	52	3	1	42	1.27
271813--271887	37	2.0	36	85	10	98	50	4	1	44	1.29
275997--276034	3	13.0	3	94	5	69	34	0	0	65	0.93
282598--282660	32	2.0	32	84	6	83	20	11	26	41	1.86
284454--284501	21	2.3	21	79	17	55	47	4	4	43	1.41
289741--289948	109	1.9	109	82	2	256	24	31	12	31	1.92
300423--300564	55	2.6	55	77	10	157	43	11	19	25	1.84
305456--305497	17	2.4	18	84	15	61	45	0	0	54	0.99
305560--305617	18	3.2	18	78	7	64	68	1	1	27	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305660--305764	39	2.7	39	72	11	106	44	0	17	37	1.55
309492--309517	13	2.0	13	100	0	52	46	30	0	23	1.53
317997--318039	16	2.6	17	85	7	54	44	0	0	55	0.99
320103--320184	29	2.8	29	94	1	137	32	14	9	42	1.79
324873--324954	29	2.8	29	94	1	137	32	14	9	42	1.79
328593--328681	31	2.9	31	91	1	135	23	16	17	41	1.90
329082--329128	11	4.4	11	83	5	69	61	19	2	17	1.44
329074--329128	21	2.6	22	82	5	69	61	21	1	14	1.42
330888--330916	14	2.1	14	100	0	58	65	13	0	20	1.26
330900--330949	11	4.6	11	85	5	75	60	20	2	18	1.46
332692--333386	352	2.0	352	94	0	1212	21	25	17	35	1.95
333519--333572	18	2.9	17	81	13	54	22	20	16	40	1.91
334208--334264	25	2.2	26	81	12	64	45	22	8	22	1.80
340807--340866	2	30.0	2	100	0	120	50	0	0	50	1.00
342956--342996	12	3.4	12	82	0	55	21	31	29	17	1.96
347820--347848	7	4.1	7	100	0	58	27	0	27	44	1.54
353246--353304	31	2.0	30	83	12	77	47	6	16	28	1.72
353734--353765	4	8.0	4	92	0	55	0	28	0	71	0.86
363127--363181	25	2.2	25	78	18	62	41	16	0	41	1.48
364529--364711	98	1.9	98	90	4	298	27	11	22	38	1.89
369147--369190	21	2.1	21	86	0	61	31	27	25	15	1.96
369704--369750	23	2.0	24	91	4	78	44	0	21	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369928--370052	31	4.0	31	91	2	198	21	20	21	36	1.95
371237--371303	34	1.9	34	82	14	84	20	11	19	47	1.81
379814--379873	28	2.1	28	81	6	68	51	13	10	25	1.71
383465--383571	51	2.1	51	96	0	196	20	25	11	42	1.85
400062--400116	28	2.0	28	85	7	76	20	21	32	25	1.97
405723--405881	76	2.1	76	88	2	230	32	11	28	27	1.91
406434--406475	22	1.9	22	85	0	57	45	7	9	38	1.64
408052--408090	14	2.8	14	100	0	78	12	7	53	25	1.65
408745--408818	28	2.6	28	91	0	103	50	2	5	41	1.39
408677--408790	42	2.7	42	87	0	156	48	3	4	43	1.40
408699--408860	70	2.3	70	96	0	297	49	3	6	40	1.45
408677--408961	84	3.4	83	72	15	187	48	3	5	42	1.42
408684--409028	28	12.3	28	74	12	95	49	3	5	41	1.43
408877--408948	22	3.4	22	74	14	87	48	2	5	43	1.40
408766--408986	42	5.3	42	88	2	293	49	3	6	40	1.45
408894--409037	70	2.1	70	89	2	218	50	2	4	41	1.38
408766--409028	84	3.1	83	80	9	284	49	3	6	41	1.43
412143--412202	31	1.9	31	89	0	93	18	10	8	63	1.50
412279--412440	76	2.1	76	95	0	288	25	30	11	31	1.92
416266--416470	74	2.7	74	87	3	277	24	31	23	20	1.98
419404--419491	31	2.9	31	83	5	99	46	5	10	37	1.62
419794--419845	19	2.7	19	82	11	54	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419822--419941	23	5.5	22	68	16	63	51	2	0	45	1.20
419943--420012	23	2.9	23	75	8	68	50	0	5	44	1.26
420181--420263	42	2.0	42	85	0	112	48	20	7	24	1.74
420431--420510	42	1.9	42	86	0	115	48	18	6	26	1.71
420498--420537	13	3.0	13	81	3	53	42	5	10	42	1.60
420966--421024	19	3.1	19	75	0	55	23	5	0	71	1.06
424193--424217	2	12.5	2	100	0	50	48	0	0	52	1.00
424889--424996	30	3.7	28	84	7	126	43	8	10	37	1.69
424911--424989	15	5.3	15	67	8	54	44	7	10	37	1.67
425283--425341	29	2.0	29	83	6	75	28	5	8	57	1.50
426331--426408	31	2.5	31	95	0	138	33	12	14	39	1.84
428400--428431	11	3.1	11	86	13	50	75	0	0	25	0.81
428916--428988	33	2.2	33	90	0	119	28	6	17	46	1.74
429038--429074	3	12.7	3	83	16	51	67	0	0	32	0.91
429038--429074	16	2.3	16	90	9	58	67	0	0	32	0.91
429038--429074	19	1.9	19	89	10	58	67	0	0	32	0.91
430684--430728	21	2.1	21	87	0	63	31	28	24	15	1.96
431531--431686	31	5.0	31	91	1	242	20	20	22	36	1.95
434668--434712	21	2.1	21	87	0	63	31	28	24	15	1.96
435515--435670	31	5.0	31	91	1	242	20	20	22	36	1.95
436408--436657	110	2.3	106	87	2	347	23	18	24	33	1.97
441011--441092	33	2.5	33	92	4	130	28	14	20	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441149--441180	5	6.8	5	92	7	50	65	0	0	34	0.93
441245--441304	17	3.4	17	73	8	66	48	0	0	51	1.00
441254--441310	11	4.9	11	75	12	51	54	0	0	45	0.99
441254--441342	19	4.8	18	73	8	81	52	0	1	46	1.07
441225--441323	36	2.7	36	93	4	162	49	0	0	50	1.00
441265--441312	25	1.9	25	83	8	62	50	0	0	50	1.00
441458--441538	42	1.9	42	89	0	126	51	12	2	33	1.52
441562--441593	15	2.1	15	100	0	64	56	6	0	37	1.25
444322--444361	17	2.2	19	86	8	57	42	0	17	40	1.49
444322--444366	17	2.6	17	85	0	54	40	0	17	42	1.50

Tables:   1   2   3