genome.fa.s8704.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008704.1 Hibiscus syriacus cultivar Beakdansim tig00111743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  516901

Tables:   1   2   3   

This is table  3  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453593--453652	23	2.6	23	81	0	75	43	5	16	35	1.70
453600--453814	87	2.5	87	90	0	340	40	7	15	35	1.77
453816--454492	198	3.4	199	86	2	871	31	15	13	39	1.86
454595--454688	30	3.2	30	79	11	81	50	1	1	47	1.15
454606--454692	14	6.2	14	69	9	52	47	1	1	50	1.16
454620--454688	28	2.5	28	74	6	70	49	1	1	47	1.19
454728--454792	24	2.8	24	95	2	114	43	0	3	53	1.16
455349--455442	30	3.2	30	79	11	81	50	1	1	47	1.15
455360--455461	14	7.2	14	70	11	57	48	1	0	49	1.19
455374--455442	28	2.5	28	74	6	70	49	1	1	47	1.19
455425--455469	14	3.1	15	84	6	58	55	2	0	42	1.12
455515--455559	23	2.0	23	90	0	72	37	17	11	33	1.85
455593--455708	23	5.0	23	94	0	196	35	18	8	37	1.82
460217--460260	20	2.2	20	95	0	79	15	22	20	40	1.90
462718--462938	43	5.1	43	83	5	268	35	20	19	23	1.96
468027--468207	82	2.2	82	83	4	213	31	16	19	32	1.94
468080--468250	42	4.1	41	72	10	141	30	17	19	31	1.95
468080--468345	124	2.1	124	80	4	277	31	19	18	30	1.96
476075--477266	392	3.0	392	98	0	2276	43	9	12	33	1.76
480044--480094	14	3.9	13	75	10	50	39	0	0	60	0.97
480344--480444	30	3.4	29	82	2	114	35	13	8	41	1.76
483070--483132	30	2.1	30	82	5	74	49	6	15	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490200--490271	15	4.9	15	82	3	101	41	6	19	31	1.78
490200--490271	30	2.4	30	97	2	137	41	6	19	31	1.78
490254--490323	20	3.5	20	96	0	131	40	10	14	35	1.79
490489--490591	28	3.5	28	78	20	97	51	1	0	45	1.19
490563--490662	23	4.2	22	71	25	62	48	1	1	50	1.14
490542--490637	28	3.6	27	72	18	94	47	1	1	50	1.15
490602--490677	22	3.3	23	75	17	70	50	0	0	50	1.00
490576--490652	30	2.5	31	77	16	79	49	0	1	49	1.09
490606--490663	21	2.7	22	82	12	68	51	0	0	48	1.00
490560--490678	53	2.3	50	84	10	141	47	0	0	50	1.12
490852--491013	42	3.9	42	97	0	288	45	17	19	17	1.86
491784--491811	2	14.0	2	100	0	56	50	0	0	50	1.00
501283--501312	15	2.0	15	100	0	60	46	20	20	13	1.83
511592--511685	44	2.2	44	88	1	136	28	12	25	32	1.93

Tables:   1   2   3

The End!