genome.fa.s8722.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008722.1 Hibiscus syriacus cultivar Beakdansim tig00111780_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  447499

Tables:   1   2   3   

This is table  2  of  3  ( 254 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219062--219244	74	2.5	75	83	7	203	30	25	19	25	1.98
221900--222059	37	4.4	37	83	13	208	46	3	7	42	1.50
221900--222050	74	2.1	70	91	7	241	45	3	7	42	1.52
221910--222092	37	5.4	32	77	16	140	45	3	7	43	1.47
222078--222130	2	27.5	2	86	7	74	50	0	0	49	1.00
222078--222194	34	3.4	34	79	13	100	48	4	1	45	1.32
222136--222467	75	4.4	74	87	7	444	43	8	3	45	1.51
222146--222467	37	8.6	38	84	9	412	43	7	3	45	1.50
222403--222515	61	1.9	59	90	3	181	46	8	2	42	1.49
222458--222540	36	2.3	37	85	4	114	45	7	2	44	1.44
224108--224316	106	2.0	107	99	0	411	24	15	17	41	1.89
231585--231626	14	2.9	14	89	6	66	38	2	0	59	1.10
231653--231713	29	2.0	31	84	6	81	47	4	1	45	1.34
231653--231713	30	2.0	31	83	3	79	47	4	1	45	1.34
231655--231729	30	2.3	30	80	11	78	48	4	2	45	1.35
232466--232515	19	2.7	18	81	6	55	48	0	0	52	1.00
236773--236865	21	4.5	21	78	4	100	39	18	24	17	1.91
236773--236865	41	2.3	41	100	0	186	39	18	24	17	1.91
236792--236926	41	3.3	41	82	6	132	38	20	21	19	1.94
236854--236948	20	4.7	20	80	2	91	34	24	17	23	1.96
237136--237188	22	2.3	23	90	3	81	18	45	13	22	1.84
237439--237496	20	2.9	20	94	0	98	13	15	22	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239642--239697	18	3.3	18	71	19	66	42	19	23	14	1.88
239642--239764	32	3.8	33	87	5	182	41	20	23	14	1.89
239643--239770	64	2.0	64	92	4	215	40	20	23	15	1.90
239764--239805	19	2.2	19	86	0	57	19	19	21	40	1.92
239773--239872	19	5.8	19	71	21	94	13	22	19	46	1.83
239800--239854	14	3.6	14	73	21	56	10	23	20	45	1.82
239779--239872	33	2.8	33	98	0	179	12	22	19	45	1.83
239976--240011	13	2.6	14	86	8	56	47	25	0	27	1.52
241377--241460	42	2.0	42	85	0	114	22	16	39	21	1.92
243410--243447	20	1.9	20	88	0	58	42	21	23	13	1.88
243415--243555	33	4.1	33	81	8	147	42	24	21	11	1.86
243410--243572	19	9.1	19	75	17	152	42	22	22	12	1.86
243485--243572	37	2.4	37	92	5	142	45	21	20	12	1.84
243568--243613	20	2.4	19	82	7	56	10	13	26	50	1.74
244159--244211	20	2.7	20	93	0	88	26	20	28	24	1.99
244220--244273	20	2.7	20	91	0	90	27	18	22	31	1.97
244160--244294	61	2.2	61	80	2	146	23	20	23	32	1.98
245038--245090	21	2.5	21	93	0	88	28	28	22	20	1.99
245315--245412	33	3.0	32	91	5	153	44	15	7	32	1.73
247687--247732	12	3.6	12	81	16	56	17	19	17	45	1.85
247686--247725	15	2.9	14	85	14	57	20	17	15	47	1.83
251337--251449	38	3.0	38	84	2	131	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254837--255150	159	2.0	154	95	4	567	36	11	15	36	1.83
260666--260707	18	2.3	18	100	0	84	28	57	4	9	1.51
260690--260752	15	4.2	15	83	0	81	22	55	9	12	1.65
260684--260752	30	2.3	30	87	0	93	23	56	8	11	1.62
263327--263367	11	3.7	11	83	0	55	53	4	4	36	1.44
268051--268102	24	2.2	23	80	6	59	25	9	17	48	1.77
271814--271849	2	18.5	2	88	5	56	47	0	0	52	1.00
272786--272821	12	3.0	12	87	0	54	33	16	25	25	1.96
273615--273671	22	2.8	20	74	10	60	26	26	17	29	1.97
274445--274600	31	5.0	31	92	1	233	39	22	17	21	1.93
275488--275547	20	2.9	21	90	7	95	18	26	25	30	1.98
276449--276491	17	2.6	16	78	7	50	39	25	0	34	1.56
279277--279432	31	5.0	31	93	1	251	37	22	18	21	1.94
280261--280316	20	2.7	21	88	5	78	21	25	25	28	1.99
280268--280320	20	2.5	21	87	9	81	20	26	22	30	1.98
292599--292623	13	1.9	13	100	0	50	16	4	0	80	0.87
306206--306622	207	2.0	208	94	0	737	28	19	18	33	1.95
307315--307766	30	15.3	30	82	3	506	11	31	23	34	1.90
309297--309393	39	2.5	39	85	11	128	38	2	40	19	1.64
321722--321911	30	6.3	30	95	0	326	11	32	24	32	1.91
325466--325533	2	37.5	2	78	19	69	45	0	0	54	0.99
325464--325529	16	4.1	17	77	14	77	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325486--325626	34	4.2	34	85	8	207	37	1	0	60	1.11
325484--325624	68	2.1	69	91	1	230	37	1	0	60	1.11
325637--325662	7	3.7	7	100	0	52	57	15	0	26	1.38
326560--326604	23	2.0	23	86	0	63	24	24	26	24	2.00
326572--326888	149	2.1	151	91	3	516	34	21	17	27	1.95
327434--327505	2	36.0	2	100	0	144	50	0	0	50	1.00
327692--327747	2	28.5	2	96	3	105	50	0	0	50	1.00
327872--327906	18	1.9	18	88	11	54	22	17	5	54	1.64
328397--328557	64	2.5	63	85	8	200	26	21	18	33	1.96
335246--335369	62	2.0	62	98	0	239	34	8	11	45	1.69
336609--336715	49	2.1	54	87	10	161	27	2	1	68	1.14
336691--336725	18	1.9	18	88	11	54	22	8	0	68	1.16
337687--337721	4	8.8	4	93	0	61	22	0	0	77	0.78
346299--346402	21	5.0	21	85	2	147	16	28	35	19	1.93
346299--346402	41	2.5	42	92	3	174	16	28	35	19	1.93
349775--349836	21	3.0	21	92	0	106	14	27	38	19	1.90
351627--351677	7	7.1	7	85	10	68	82	1	13	1	0.85
351634--351684	15	3.3	15	81	13	68	78	1	17	1	0.94
351627--351683	30	1.9	29	89	10	89	80	1	15	1	0.87
352799--353037	110	2.2	110	82	4	281	34	23	16	25	1.95
354510--354577	31	2.2	31	86	2	93	47	5	13	33	1.67
354746--354831	27	3.4	24	75	21	77	16	6	4	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356992--357030	17	2.3	17	81	0	51	35	0	0	64	0.94
363609--363652	19	2.3	19	88	0	61	15	27	22	34	1.95
365989--366048	27	2.2	27	87	0	84	18	16	35	30	1.93
370230--370375	37	3.9	37	94	0	247	21	21	16	40	1.91
370393--370499	42	2.5	42	84	0	142	35	20	15	28	1.94
370567--371016	220	2.0	220	87	2	654	34	18	15	31	1.92
376073--376323	125	2.0	125	100	0	502	31	21	17	29	1.96
380517--380557	21	1.9	22	85	5	57	75	0	9	14	1.04
384953--385012	25	2.3	25	80	5	66	48	3	10	38	1.53
386472--386530	10	5.7	10	75	15	57	59	18	10	11	1.60
386479--386529	16	3.2	16	85	0	75	60	19	7	11	1.55
386624--386705	36	2.3	35	82	2	92	29	23	19	28	1.98
386651--386698	23	2.1	23	92	0	78	25	25	18	31	1.98
386654--386723	12	6.0	12	78	6	81	24	24	20	31	1.98
386666--386723	23	2.5	24	81	13	68	24	25	18	31	1.98
387559--387609	19	2.7	19	100	0	102	29	21	25	23	1.99
388056--388136	29	2.8	29	96	3	146	44	16	22	17	1.86
388221--388254	15	2.3	15	94	0	59	14	20	32	32	1.93
389837--389877	2	21.0	2	95	5	75	48	0	0	51	1.00
395713--395755	21	2.0	21	81	0	50	30	30	25	13	1.94
395713--395885	67	2.6	67	85	6	208	28	27	26	16	1.97
396177--396255	27	3.0	27	82	12	101	37	10	12	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396667--396711	23	2.0	23	86	0	63	20	24	28	26	1.99
396405--396696	142	2.0	139	92	4	413	27	16	21	34	1.95
402740--402782	21	2.0	21	81	0	50	30	30	25	13	1.94
402740--402911	67	2.6	67	86	5	215	28	27	26	17	1.98
402875--402912	20	1.9	20	88	0	58	23	34	31	10	1.89
403214--403285	29	2.5	29	93	0	117	38	9	12	38	1.76
403590--403665	2	38.0	2	100	0	152	50	0	0	50	1.00
403769--403813	23	2.0	23	90	0	72	22	26	26	24	2.00
404680--405129	149	3.0	149	99	0	893	35	20	16	26	1.95
405243--405317	31	2.5	31	82	10	84	26	25	9	38	1.86

Tables:   1   2   3