genome.fa.s8730.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008730.1 Hibiscus syriacus cultivar Beakdansim tig00111799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  439989

Tables:   1   2   

This is table  2  of  2  ( 195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302122--302201	29	2.8	29	98	0	151	16	30	33	20	1.94
307120--307156	10	3.7	10	96	0	65	40	0	10	48	1.38
310131--310165	17	2.0	18	88	5	54	17	45	22	14	1.84
310173--310244	29	2.5	29	86	0	90	20	9	26	43	1.83
310202--310269	29	2.3	29	84	0	82	23	7	26	42	1.80
312619--312654	2	19.0	2	88	11	58	47	0	0	52	1.00
312619--312654	13	2.8	13	95	4	65	47	0	0	52	1.00
312762--312791	16	1.9	15	93	6	51	56	3	13	26	1.52
313009--313104	31	3.1	30	71	12	79	27	19	20	32	1.97
313087--313339	30	8.4	30	97	0	470	24	20	23	32	1.98
320033--320128	29	3.3	29	78	5	77	25	8	22	43	1.81
321678--321713	11	3.3	11	96	0	63	61	0	2	36	1.11
324114--324161	20	2.5	19	78	18	55	33	0	6	60	1.22
326323--326348	5	5.2	5	100	0	52	38	19	0	42	1.51
327225--327294	35	2.0	35	97	0	131	21	8	15	54	1.68
328947--329068	21	6.1	21	68	12	69	23	54	5	15	1.62
328956--329089	39	3.4	39	85	0	178	24	52	6	15	1.66
330064--330118	20	2.8	20	100	0	110	25	34	9	30	1.87
330111--330203	40	2.3	40	81	5	109	36	21	17	24	1.94
330962--330995	12	2.8	12	90	0	50	55	29	0	14	1.40
331116--331162	24	2.0	24	95	0	85	27	21	17	34	1.95
333289--333324	18	2.0	18	94	0	63	55	25	2	16	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333609--333659	20	2.5	20	87	0	75	43	21	19	15	1.88
333758--333807	14	3.8	13	72	17	50	26	8	22	44	1.80
333757--333806	25	2.0	25	92	0	82	28	8	20	44	1.79
334192--334238	18	2.6	18	79	0	58	36	6	8	48	1.59
334184--334236	24	2.2	24	89	0	79	33	5	13	47	1.66
334193--334244	24	2.2	24	82	0	59	34	9	9	46	1.69
335867--335962	21	4.6	21	78	8	106	22	15	36	25	1.94
336106--336155	4	12.5	4	82	0	64	68	4	2	26	1.18
338068--338118	20	2.5	20	80	0	66	52	19	11	15	1.73
338177--338216	16	2.4	17	87	8	55	77	15	5	2	1.04
338424--338471	22	2.2	22	92	0	78	22	14	41	20	1.89
338602--338746	20	7.3	19	72	18	109	20	17	21	40	1.92
338602--338746	60	2.4	60	92	0	236	20	17	21	40	1.92
338772--338842	20	3.6	19	74	12	72	25	15	30	28	1.96
341243--341289	11	4.1	12	81	5	53	51	0	0	48	1.00
341225--341282	23	2.4	23	82	5	71	50	1	0	48	1.11
341488--341535	23	2.1	23	84	7	62	45	0	0	54	0.99
346154--346181	2	14.0	2	100	0	56	50	0	0	50	1.00
349143--349252	42	2.5	46	86	7	147	40	9	18	32	1.82
350882--350908	2	13.5	2	100	0	54	51	0	0	48	1.00
352829--352894	33	2.0	33	96	0	123	27	22	27	22	1.99
358395--358440	16	2.8	16	86	6	56	73	2	2	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359028--359219	68	2.8	69	82	9	209	57	12	2	28	1.47
360995--361065	30	2.4	29	81	11	83	18	7	11	63	1.49
361012--361129	30	4.0	29	75	4	110	19	11	11	56	1.65
362305--362347	17	2.5	17	96	0	77	25	4	41	27	1.75
363889--363915	11	2.5	11	100	0	54	85	14	0	0	0.61
365570--365658	32	2.8	32	81	10	101	31	15	21	31	1.95
370001--370162	65	2.5	63	83	6	182	26	20	17	35	1.95
371058--371178	43	2.8	43	86	2	154	32	30	17	19	1.95
371101--371744	292	2.2	292	93	1	1103	32	25	18	23	1.97
371677--371785	43	2.5	43	86	0	146	26	32	19	22	1.97
372011--372121	43	2.6	43	82	5	127	26	32	19	21	1.97
371386--372243	335	2.6	335	93	0	1459	31	24	19	24	1.98
372282--372625	121	2.9	121	89	0	519	34	26	15	24	1.95
372766--372872	40	2.7	40	91	0	169	22	31	17	28	1.97
372997--373022	3	8.7	3	100	0	52	34	0	0	65	0.93
374148--374207	29	2.0	29	84	9	77	21	5	11	61	1.49
375717--375763	24	2.0	24	83	8	60	57	12	2	27	1.47
378935--378977	20	2.2	20	87	4	61	67	0	11	20	1.22
385831--385877	24	2.0	24	83	8	60	57	12	2	27	1.47
393611--393687	23	3.2	24	68	27	58	62	2	2	32	1.23
397865--398178	155	2.0	157	97	2	596	28	27	18	25	1.98
399683--399727	17	2.6	17	75	0	54	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403630--403680	23	2.2	23	96	0	93	43	5	41	9	1.62
405881--405931	2	25.5	2	100	0	102	50	0	0	49	1.00
414674--414831	83	1.9	83	86	0	226	40	3	11	44	1.58
416850--416924	24	3.6	21	76	15	75	30	21	13	34	1.92
417019--417091	19	3.8	19	100	0	146	21	24	16	36	1.94
416892--417051	64	2.5	64	88	1	241	30	17	15	37	1.90
419293--419912	323	1.9	322	96	0	1159	42	15	15	26	1.86
420246--420280	17	2.1	17	100	0	70	40	5	25	28	1.78
426804--439983	7	1924.7	7	93	6	22589	13	0	42	42	1.47

Tables:   1   2

The End!