genome.fa.s8733.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008733.1 Hibiscus syriacus cultivar Beakdansim tig00111806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  774200

Tables:   1   2   3   4   

This is table  4  of  4  ( 466 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587086--587111	2	13.0	2	100	0	52	50	0	0	50	1.00
589963--590120	21	7.8	20	72	7	86	38	25	17	18	1.92
590086--590201	20	5.8	20	74	6	108	41	25	17	15	1.89
590086--590201	40	2.9	41	85	2	162	41	25	17	15	1.89
590582--590652	33	2.2	33	89	0	106	11	23	16	47	1.79
590732--590841	21	5.8	20	74	17	108	45	18	24	11	1.83
590725--590841	41	3.1	38	81	14	145	46	17	25	11	1.81
590792--590848	14	3.7	14	75	20	60	43	22	24	8	1.81
590784--590864	33	2.5	33	95	0	144	46	22	22	8	1.78
590860--590957	19	5.7	19	70	22	81	10	24	22	42	1.84
590882--590971	14	5.7	14	74	23	81	8	25	23	42	1.83
590865--590979	33	3.5	33	95	0	212	9	24	20	45	1.81
592675--592871	93	2.1	93	98	0	385	23	12	18	46	1.82
592913--593041	19	7.3	19	75	17	125	45	28	17	8	1.77
592949--593041	33	2.8	32	91	4	150	46	27	18	7	1.76
592913--593041	52	2.5	52	74	14	140	45	28	17	8	1.77
593037--593171	19	7.6	19	75	16	128	11	19	23	45	1.82
593059--593115	14	3.7	14	77	20	60	10	21	22	45	1.82
593042--593134	33	2.8	33	95	0	168	10	20	21	47	1.80
595094--595129	14	2.6	14	95	0	63	33	0	22	44	1.53
595236--595333	19	5.4	19	84	13	143	45	16	22	15	1.84
595236--595352	53	2.2	53	95	1	209	44	16	23	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597813--597859	24	2.0	24	87	8	69	38	21	14	25	1.92
598537--598786	20	12.5	20	86	1	268	20	17	24	37	1.93
600759--600847	20	4.3	20	75	4	88	34	21	16	26	1.95
600856--600904	20	2.5	20	86	0	71	40	18	18	22	1.91
601411--601464	20	2.7	19	80	8	63	16	16	20	46	1.84
603718--603857	66	2.2	60	86	7	181	30	0	17	51	1.50
603916--603971	20	2.8	20	75	0	67	41	17	19	21	1.91
604230--604316	39	2.2	39	95	0	156	17	13	20	48	1.81
604628--604664	18	2.1	18	89	0	56	51	10	5	32	1.60
604620--604672	24	2.2	24	89	0	79	47	13	5	33	1.66
607566--607590	12	2.1	12	100	0	50	0	28	0	72	0.86
607781--607832	24	2.2	24	82	0	59	36	21	19	23	1.95
607945--607979	12	2.9	12	91	0	52	14	0	28	57	1.38
608723--608795	19	3.7	20	80	14	71	28	12	21	36	1.90
608762--608930	40	4.2	40	74	9	139	20	16	22	40	1.91
608783--608930	80	1.9	80	89	0	233	20	16	22	41	1.90
608741--608893	60	2.5	61	78	11	172	22	14	21	41	1.89
608723--608909	20	9.4	19	74	12	110	22	14	21	40	1.90
608809--608974	80	2.1	80	84	4	210	24	15	22	36	1.93
612437--612476	20	2.0	21	95	5	73	55	5	15	25	1.60
615015--615083	25	2.8	25	97	0	129	30	13	21	34	1.91
615561--615594	16	2.1	16	94	0	59	38	17	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618596--618626	16	1.9	16	93	0	53	64	0	6	29	1.18
622422--622462	21	2.0	21	90	0	64	24	17	24	34	1.96
623486--623552	19	3.5	19	91	0	107	31	22	26	19	1.98
624242--624298	23	2.5	23	91	0	87	17	26	28	28	1.98
627579--627612	16	2.1	16	88	0	50	64	2	20	11	1.39
629844--629896	19	2.8	19	97	0	97	30	18	26	24	1.98
629785--629959	82	2.1	83	82	7	205	33	21	19	26	1.97
630605--630650	23	2.0	23	86	0	65	19	23	26	30	1.98
631799--631834	14	2.6	14	95	0	63	63	0	13	22	1.29
631803--631861	14	4.1	14	86	2	55	55	0	22	22	1.43
631922--632172	39	6.4	39	87	1	308	30	21	28	19	1.97
631927--632172	117	2.1	117	86	0	339	31	21	28	18	1.97
638477--638714	78	3.1	78	81	0	251	31	23	24	20	1.98
638477--638689	39	5.5	39	81	0	210	32	24	23	18	1.97
640707--640747	21	2.0	21	85	0	55	48	9	14	26	1.75
649498--649572	34	2.2	34	95	0	141	24	24	24	28	2.00
655696--655731	13	2.8	13	86	0	54	22	47	19	11	1.80
655693--655749	18	3.4	18	70	22	61	19	49	19	12	1.79
655693--655755	31	2.0	31	93	0	108	19	47	19	14	1.82
656699--656973	117	2.4	117	98	0	532	17	15	34	32	1.91
657685--657714	14	2.1	14	100	0	60	20	26	20	33	1.97
670117--670193	25	3.0	26	84	9	86	19	3	1	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670104--670174	37	1.9	36	83	8	90	15	5	0	78	0.92
670113--670193	26	3.1	27	82	13	89	19	3	1	75	1.02
670104--670182	13	6.0	13	70	22	58	16	5	0	78	0.92
670119--670196	19	3.7	20	72	21	52	20	3	1	74	1.05
670148--670196	18	2.7	18	83	3	53	24	0	2	73	0.94
673546--673837	61	4.9	60	73	8	184	49	3	9	37	1.53
673546--673771	86	2.6	88	85	7	305	48	3	8	38	1.52
673519--673792	30	9.3	30	76	8	224	50	3	8	37	1.50
674785--674846	31	2.0	32	87	9	92	54	6	6	32	1.51
675987--676066	23	3.5	23	94	0	142	26	12	10	51	1.71
679998--680052	2	28.5	2	76	7	51	49	3	3	43	1.37
680429--680748	129	2.5	129	75	9	312	31	15	19	33	1.93
705106--705213	36	3.0	36	87	1	155	38	11	12	37	1.78
711787--711838	3	17.7	3	96	4	97	32	0	0	67	0.91
715504--715546	22	2.0	21	82	13	52	27	4	11	55	1.55
719051--719149	27	3.6	27	94	1	162	37	30	6	26	1.80
722009--722098	45	2.0	44	89	2	135	31	5	18	44	1.73
726939--726981	21	2.0	22	81	4	52	20	4	11	62	1.46
727163--727198	14	2.7	13	83	8	54	52	0	5	41	1.24
728197--728221	13	1.9	13	100	0	50	32	16	24	28	1.96
728273--728343	35	2.0	35	91	0	115	33	11	15	39	1.83
728377--728449	21	3.4	21	77	5	76	39	17	12	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728883--728910	3	9.3	3	100	0	56	32	0	0	67	0.91
731718--731789	35	2.1	35	89	5	110	34	9	15	40	1.80
731839--731897	21	2.8	21	74	5	57	44	15	13	27	1.84
731974--732028	24	2.3	24	90	0	92	54	21	9	14	1.68
734600--734643	22	2.0	21	86	4	61	52	6	13	27	1.66
736004--736272	92	3.0	90	84	5	319	28	18	21	31	1.96
736405--736620	39	5.5	39	91	0	324	37	15	17	30	1.91
736704--736817	42	2.7	41	77	6	122	31	22	17	28	1.97
736850--736925	38	2.0	38	86	0	107	34	17	15	32	1.91
741393--741449	22	2.5	22	78	16	62	57	5	12	24	1.55
742437--742549	58	1.9	60	87	5	167	27	23	14	35	1.93
742563--742866	54	5.7	54	87	3	371	28	17	20	33	1.95
742563--742866	106	2.8	108	84	4	382	28	17	20	33	1.95
745149--745277	44	2.9	43	77	4	123	30	16	17	35	1.92
750882--750915	16	2.1	16	89	10	52	50	2	2	44	1.32
759798--759862	30	2.1	31	94	2	114	46	7	6	40	1.58
763661--763761	49	2.1	49	92	3	168	30	9	6	52	1.61
766981--767013	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1   2   3   4

The End!