genome.fa.s8739.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008739.1 Hibiscus syriacus cultivar Beakdansim tig00111817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  827959

Tables:   1   2   3   4   

This is table  2  of  4  ( 473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231926--231970	18	2.5	19	82	13	60	66	0	4	28	1.11
231923--231983	10	5.6	10	76	21	52	65	0	4	29	1.13
234036--234068	2	16.5	2	100	0	66	48	0	0	51	1.00
245163--245219	27	2.1	27	90	0	87	15	17	47	19	1.83
245421--245458	6	6.8	6	85	14	55	71	0	0	28	0.87
245455--245488	3	11.7	3	87	6	52	67	2	0	29	1.05
249610--249687	36	2.3	35	93	6	133	42	7	42	7	1.62
250193--250222	2	15.0	2	100	0	60	50	0	0	50	1.00
251712--251771	2	30.0	2	100	0	120	50	0	0	50	1.00
253558--253611	27	2.0	27	81	0	63	40	3	1	53	1.29
254611--254648	20	1.9	20	94	0	67	60	5	10	23	1.50
254610--254655	20	2.5	17	78	18	56	56	4	13	26	1.55
259138--259181	22	2.0	22	90	0	70	6	13	27	52	1.66
260365--260389	7	3.6	7	100	0	50	40	16	0	44	1.47
261675--261713	19	2.1	19	95	0	69	51	10	12	25	1.71
263588--263666	37	2.3	33	78	17	97	12	11	35	40	1.79
263604--263680	37	2.1	38	92	7	131	12	10	35	41	1.78
263778--263862	36	2.4	36	95	0	161	15	16	32	35	1.90
263416--263936	257	2.0	254	85	7	707	23	12	27	36	1.90
263882--263972	39	2.2	40	92	5	148	13	10	38	37	1.80
264504--264548	18	2.6	17	83	10	56	28	28	6	35	1.83
265416--265449	2	17.0	2	93	0	50	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265423--265455	16	2.1	16	94	0	57	33	0	15	51	1.43
265425--265453	14	2.1	14	100	0	58	34	0	13	51	1.42
268181--268220	18	2.2	18	90	0	62	47	22	15	15	1.82
270524--270561	20	1.9	20	100	0	76	34	26	15	23	1.95
271044--271103	31	1.9	31	86	0	84	31	18	16	33	1.93
271706--271738	12	2.8	12	100	0	66	18	18	21	42	1.89
275830--275863	4	8.5	4	93	0	50	23	5	26	44	1.76
281243--281379	67	2.0	67	100	0	274	48	4	14	32	1.64
282794--282859	3	22.3	3	87	6	91	69	0	1	28	0.97
282954--283602	260	2.5	259	91	1	1052	33	16	16	34	1.91
283421--283522	42	2.5	41	79	3	123	31	19	23	25	1.98
285339--285386	17	2.8	17	79	20	55	6	20	0	72	1.05
285361--285421	24	2.5	23	79	12	59	4	18	3	73	1.14
286076--286162	33	2.7	32	78	3	93	31	11	27	29	1.92
290450--290521	27	2.7	27	95	2	128	29	23	11	36	1.89
294058--294119	3	21.3	3	81	15	69	69	0	0	30	0.89
294058--294119	16	4.0	16	87	4	83	69	0	0	30	0.89
309065--309122	21	2.7	20	79	12	62	75	1	13	8	1.10
309091--309149	14	4.0	14	80	8	55	76	0	5	18	0.97
309082--309130	19	2.5	20	80	9	66	77	0	10	12	0.99
309282--309332	14	3.8	13	80	10	50	62	0	0	37	0.95
310440--310799	39	9.7	36	75	13	252	43	7	3	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310404--310751	113	3.1	111	73	16	266	44	6	3	45	1.44
310589--310799	74	2.8	72	81	11	205	43	8	2	45	1.46
311381--312292	84	11.0	84	78	7	913	25	20	24	29	1.99
311366--312292	163	5.6	163	83	6	1039	24	20	24	30	1.99
315359--315392	13	2.6	13	100	0	68	55	0	0	44	0.99
315437--315490	24	2.2	23	75	18	56	72	3	7	16	1.22
315456--315516	29	2.2	27	82	5	68	78	4	3	13	1.03
315811--315860	2	24.5	2	87	4	73	50	0	4	46	1.20
316037--316061	2	12.5	2	100	0	50	52	0	0	48	1.00
316053--316102	15	3.0	17	85	14	61	68	4	2	26	1.18
316129--316232	6	18.2	6	68	26	50	66	0	3	28	1.16
316124--316232	24	4.3	24	73	22	82	66	0	3	28	1.14
316787--316888	37	2.8	37	86	0	132	31	15	13	39	1.87
317497--319266	106	17.0	106	90	3	2554	23	17	25	34	1.96
317497--319266	628	2.8	630	90	3	2675	23	17	25	34	1.96
319230--319348	49	2.5	47	72	5	105	21	15	24	38	1.92
320072--320148	22	3.5	22	94	0	136	20	14	27	37	1.91
320751--320827	16	4.8	16	70	19	54	1	10	9	79	1.00
326049--326089	11	3.6	11	87	6	55	65	4	4	24	1.32
326766--326867	37	2.8	37	87	0	141	32	13	12	41	1.83
329336--329396	3	21.3	3	90	9	101	65	0	0	34	0.93
329454--329486	7	4.7	7	100	0	66	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329448--329487	14	2.8	14	84	3	53	77	0	20	2	0.88
329444--329498	21	2.6	22	74	8	60	76	0	16	7	1.00
329500--329547	19	2.5	19	78	18	55	64	2	4	29	1.23
329671--329707	4	9.2	4	87	0	56	70	0	2	27	1.01
330196--330247	24	2.1	26	82	13	65	7	7	28	55	1.56
330759--331076	35	9.4	32	70	19	141	45	6	2	45	1.42
330789--330854	34	1.9	34	84	6	89	54	7	0	37	1.29
330784--331072	100	2.9	97	78	10	276	45	6	2	44	1.45
330942--330968	12	2.2	12	100	0	54	40	7	0	51	1.30
331010--331068	12	5.1	12	74	13	61	49	8	0	42	1.33
330894--331076	35	5.3	33	74	18	142	45	5	1	48	1.33
331521--331549	15	2.0	15	93	6	51	48	0	0	51	1.00
332739--332770	6	5.3	6	100	0	64	34	0	15	50	1.45
333829--333869	18	2.2	20	82	8	50	31	4	0	63	1.15
334675--334726	27	2.0	27	96	3	97	36	1	46	15	1.57
335039--335081	19	2.3	19	79	0	50	18	20	2	58	1.50
338531--338590	3	19.7	3	86	10	86	31	0	0	68	0.90
339935--339985	19	2.9	17	74	14	50	25	1	5	66	1.24
340003--340032	3	10.0	3	92	0	51	33	3	0	63	1.11
340886--341046	80	2.0	79	92	7	274	27	21	13	38	1.90
342511--342563	13	3.8	14	78	9	54	24	13	9	52	1.69
344368--344417	25	2.0	24	96	3	91	70	12	14	4	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344404--344471	21	3.5	20	79	13	79	82	0	14	2	0.79
350250--350389	54	2.6	54	88	2	201	34	16	22	27	1.95
350754--350808	22	2.5	22	81	0	74	34	14	12	38	1.84
351244--351768	113	4.6	113	93	1	865	37	14	18	29	1.90
352039--352113	3	24.0	3	86	8	105	33	0	0	66	0.92
353485--353541	29	2.0	29	82	6	71	26	1	5	66	1.22
353536--353565	3	10.0	3	92	0	51	33	3	0	63	1.11
355630--355682	27	2.0	27	88	7	81	41	3	39	15	1.65
355993--356046	19	2.8	19	83	5	65	18	24	1	55	1.52
358568--358616	18	2.8	17	81	6	53	71	0	2	26	0.97
360694--360737	13	3.5	13	90	6	72	6	34	0	59	1.24
367502--367531	13	2.2	14	94	5	53	40	13	26	20	1.89
376040--376070	15	2.1	15	93	0	53	48	0	3	48	1.17
378833--379018	94	2.0	96	87	4	270	30	17	26	25	1.97
378836--379056	94	2.3	96	82	4	234	30	16	26	26	1.96
379466--379800	45	7.4	45	86	3	437	40	9	19	30	1.83
379466--379781	135	2.4	134	90	2	483	41	9	19	29	1.82
390103--390147	23	2.0	23	90	0	72	22	26	26	24	2.00
395052--395366	149	2.1	149	97	1	587	27	16	21	34	1.95
395334--395378	23	2.0	23	90	0	72	22	26	26	24	2.00
397084--397131	3	16.3	3	95	4	89	66	0	33	0	0.92
397552--397601	25	2.0	24	84	3	64	36	6	0	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403134--403181	23	2.1	23	88	0	69	52	0	2	45	1.12
404939--404981	12	3.7	12	84	3	52	30	0	2	67	1.03
410038--410092	20	2.8	20	91	0	83	18	29	10	41	1.84
411643--411698	16	3.4	16	76	14	60	76	0	12	10	1.01
411666--411767	14	7.4	14	75	21	74	78	1	15	3	0.99
411666--411775	28	3.9	26	73	18	87	78	1	15	4	1.00
411645--411773	22	5.7	21	70	19	57	77	1	14	6	1.03
411707--411794	26	3.3	27	77	7	72	75	2	19	3	1.06
411702--411802	45	2.2	46	81	10	111	75	1	17	4	1.08
413754--414265	38	13.1	38	81	10	570	25	18	16	39	1.91

Tables:   1   2   3   4