genome.fa.s8739.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008739.1 Hibiscus syriacus cultivar Beakdansim tig00111817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  827959

Tables:   1   2   3   4   

This is table  4  of  4  ( 473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603070--603132	28	2.2	30	88	5	94	55	11	1	31	1.44
603109--603148	21	2.0	21	95	5	73	57	12	0	30	1.36
603161--603244	30	2.8	30	86	10	127	0	38	0	61	0.96
603185--603223	20	2.0	20	100	0	78	0	35	0	64	0.94
603171--603241	34	2.1	34	87	10	101	0	36	0	63	0.95
603160--603244	15	5.7	14	84	12	107	0	37	0	62	0.96
603592--603652	29	2.1	29	84	0	77	14	34	24	26	1.94
607260--607297	18	2.2	18	86	9	53	71	7	2	18	1.23
614629--614666	14	2.5	16	83	12	53	52	5	2	39	1.38
615038--615084	25	1.9	24	86	4	67	29	0	0	70	0.88
618294--618400	24	4.5	24	72	0	88	47	15	13	23	1.81
618294--618402	48	2.3	48	75	0	110	47	15	13	22	1.81
619528--619563	18	2.0	18	88	0	54	30	16	0	52	1.44
620874--620905	7	4.4	7	92	7	55	25	28	34	12	1.92
620875--620921	15	3.3	15	91	5	71	21	25	38	14	1.92
620903--620979	18	4.6	18	81	15	110	11	20	50	16	1.76
620897--620975	31	2.5	31	95	0	149	13	21	48	16	1.81
620875--620921	8	6.5	8	79	20	59	21	25	38	14	1.92
620882--620957	13	5.3	13	77	17	71	17	22	44	15	1.86
622444--622503	29	2.1	28	84	9	77	41	8	6	43	1.61
623419--623455	2	18.5	2	100	0	74	48	0	0	51	1.00
635893--636012	42	2.9	42	96	0	213	15	19	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636186--636322	53	2.6	52	80	10	129	49	0	0	48	1.11
636186--636260	22	3.3	23	79	7	73	49	0	0	50	1.00
636212--636322	31	3.8	31	74	16	94	47	0	0	50	1.13
636299--636342	20	2.0	21	79	16	54	38	0	0	61	0.96
636304--636342	20	2.0	20	89	0	60	41	0	0	58	0.98
636317--636371	28	2.0	29	89	7	87	43	1	1	52	1.22
636539--636605	20	3.3	20	95	0	125	34	14	8	41	1.78
636539--636617	40	2.0	40	87	0	113	35	15	7	41	1.75
636591--636671	15	5.5	15	85	5	112	35	18	6	39	1.76
636591--636671	29	2.8	29	90	5	119	35	18	6	39	1.76
636591--636676	44	2.0	43	93	2	145	33	18	5	41	1.74
646780--646861	18	4.6	18	96	0	155	28	15	26	29	1.96
648779--648847	36	1.9	36	96	0	129	33	30	11	24	1.91
656437--656474	18	2.1	18	90	9	60	18	0	7	73	1.06
656437--656476	12	3.5	11	86	6	53	20	0	7	72	1.08
662380--662574	76	2.6	76	87	3	279	30	15	12	41	1.84
662422--662544	40	3.2	39	68	13	101	31	15	9	43	1.79
662867--662926	20	3.0	20	67	13	61	28	20	18	33	1.96
662549--663074	39	13.6	39	88	1	686	32	17	15	35	1.91
663100--663595	136	3.7	135	83	4	588	34	15	21	27	1.94
663622--663864	118	2.0	120	84	7	318	42	16	17	23	1.88
667029--667058	14	2.1	14	93	0	51	53	6	16	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667327--667374	25	1.9	25	83	8	62	56	4	10	29	1.52
672203--672280	19	4.1	19	86	1	111	29	19	26	24	1.98
672203--672277	38	1.9	39	94	2	134	30	20	26	22	1.98
672420--672470	20	2.5	20	93	0	84	21	29	27	21	1.99
673310--673347	20	1.9	20	100	0	76	15	10	44	28	1.80
673360--673424	20	3.2	20	86	0	85	20	10	24	44	1.83
673418--673508	20	4.5	20	70	8	58	24	16	21	37	1.94
691962--691992	14	2.1	15	94	5	55	54	0	0	45	0.99
693266--693302	18	2.1	18	100	0	74	40	5	0	54	1.24
698488--698551	29	2.2	29	94	0	110	46	10	9	32	1.71
698624--698679	29	1.9	29	92	0	94	50	8	5	35	1.57
698754--698831	29	2.7	29	73	2	75	46	10	8	34	1.69
698451--698942	140	3.5	139	84	4	632	41	11	10	36	1.75
699835--699866	2	16.0	2	100	0	64	50	0	0	50	1.00
700207--700233	7	3.9	7	100	0	54	74	0	0	25	0.83
700336--700381	5	9.8	5	79	13	53	78	0	2	19	0.86
700334--700381	22	2.1	23	88	3	71	79	0	2	18	0.84
700307--700381	27	2.6	30	80	14	79	74	1	4	20	1.05
701707--701769	3	20.7	3	77	9	56	58	1	1	38	1.17
702440--702527	46	1.9	46	88	2	133	29	25	18	27	1.98
709999--710042	21	2.1	21	82	0	52	9	43	15	31	1.79
711150--711207	20	2.9	20	97	0	107	31	34	15	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711235--711312	19	3.7	19	71	21	66	30	28	16	24	1.97
711229--711363	45	3.0	45	92	1	216	28	26	17	26	1.98
712396--712735	84	4.1	84	82	2	396	25	17	24	32	1.97
712371--712735	167	2.2	167	83	2	446	24	17	24	33	1.96
717275--717348	5	14.8	5	74	23	59	75	1	4	18	1.03
717273--717348	13	5.2	13	77	20	71	76	1	3	18	1.01
717305--717338	9	3.8	9	100	0	68	70	0	8	20	1.13
720243--720273	16	1.9	16	93	0	53	29	6	0	64	1.18
721306--721506	105	1.9	104	85	5	280	15	17	24	41	1.89
731778--731813	17	2.1	17	94	0	63	30	33	25	11	1.90
733241--733319	31	2.6	31	83	2	106	27	18	18	34	1.95
744306--744341	18	1.9	19	94	5	65	22	0	13	63	1.29
746112--746182	13	5.6	13	81	18	96	40	12	7	39	1.70
746111--746192	25	3.3	25	100	0	164	39	12	7	41	1.70
746583--746629	19	2.5	19	100	0	94	29	31	23	14	1.95
747228--747289	30	2.1	30	100	0	124	30	14	3	51	1.58
763999--764036	20	1.9	20	84	10	51	34	0	21	44	1.52
764008--764045	20	1.9	20	88	0	58	28	0	23	47	1.52
764892--764972	24	3.4	24	81	6	92	19	16	17	46	1.84
764936--765010	24	3.1	24	81	12	73	22	17	14	45	1.85
765962--766027	33	2.0	33	93	0	114	36	16	16	30	1.91
772881--772974	31	3.0	31	74	9	93	26	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779839--779877	15	2.6	15	83	0	51	38	5	2	53	1.37
779874--779906	2	16.5	2	100	0	66	51	0	0	48	1.00
781182--781244	18	3.4	18	71	16	56	28	30	20	20	1.98
785701--786185	261	1.9	261	82	3	618	33	11	15	39	1.84
785701--786198	131	3.8	131	84	4	594	32	11	15	39	1.84
789795--789828	11	3.1	11	82	0	50	23	23	11	41	1.87
796984--797114	18	6.9	18	74	17	81	77	0	16	6	0.98
797006--797106	22	4.5	22	76	14	82	79	0	13	6	0.93
797058--797094	4	10.0	4	83	16	53	78	0	21	0	0.75
796988--797106	7	16.3	7	71	20	59	78	0	15	6	0.95
798349--798784	133	3.3	134	79	6	397	31	22	15	30	1.95
798898--798934	18	2.0	20	89	10	60	48	0	0	51	1.00
800488--800518	11	2.8	11	100	0	62	9	16	25	48	1.76
803774--804247	51	9.1	50	77	11	384	22	24	18	33	1.97
803776--804191	105	4.0	104	79	9	411	22	24	18	33	1.97
803774--804191	156	2.7	156	85	3	565	22	24	18	33	1.97
804175--804353	55	3.3	55	82	3	238	27	27	15	29	1.96
805299--805331	10	3.2	10	95	4	57	9	0	0	90	0.44
805299--805331	11	3.1	11	91	8	59	9	0	0	90	0.44
808848--808875	8	3.5	8	100	0	56	50	10	0	39	1.37
818771--819136	131	2.8	129	87	3	518	31	11	16	40	1.84
822354--822396	19	2.4	19	84	7	63	25	6	0	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822573--822598	6	4.3	6	100	0	52	0	15	50	34	1.45
824798--824857	31	1.9	30	83	6	75	48	5	10	36	1.59
827633--827665	7	4.7	7	92	7	50	69	0	30	0	0.88

Tables:   1   2   3   4

The End!