genome.fa.s8751.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008751.1 Hibiscus syriacus cultivar Beakdansim tig00111842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  806611

Tables:   1   2   3   4   

This is table  4  of  4  ( 473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582405--582488	23	3.7	23	71	16	59	38	3	8	50	1.50
586056--586093	17	2.2	17	86	9	51	39	2	0	57	1.12
586378--586435	20	2.9	20	92	0	98	37	8	32	20	1.83
586378--586448	20	3.8	18	87	7	74	39	8	30	21	1.83
586588--586665	38	2.1	38	80	7	88	47	5	2	44	1.38
597405--597445	21	2.0	21	95	0	73	24	29	19	26	1.98
598030--598080	26	2.0	24	81	7	57	33	17	3	45	1.67
599077--599141	16	3.9	16	70	9	58	67	3	0	29	1.05
605976--606025	20	2.5	20	96	0	91	46	16	6	32	1.71
607731--607829	33	3.1	33	85	2	103	26	11	24	38	1.88
607757--607829	31	2.3	33	88	4	105	27	15	23	34	1.94
611812--611910	33	3.1	31	80	8	101	26	11	22	40	1.87
614925--614964	17	2.4	17	95	0	71	27	0	5	67	1.11
621303--621341	19	2.0	20	90	5	62	64	2	0	33	1.08
622474--622516	18	2.5	18	81	7	54	53	0	0	46	1.00
624076--624150	3	25.0	3	81	5	80	61	2	0	36	1.10
624815--624858	4	11.0	4	100	0	88	75	0	0	25	0.81
626668--626709	15	2.6	16	82	17	52	33	4	0	61	1.17
629390--629447	13	4.4	13	72	10	55	60	1	0	37	1.07
629402--629451	26	1.9	26	88	8	75	62	4	0	34	1.14
629630--629673	19	2.3	19	84	7	54	61	0	4	34	1.16
631181--631478	145	2.0	146	88	3	440	35	22	15	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631532--631915	191	2.0	194	97	2	738	33	20	7	38	1.81
632983--633139	64	2.5	62	80	8	154	28	16	20	35	1.94
638027--638183	64	2.5	62	81	8	163	28	16	20	34	1.94
650441--650490	20	2.7	18	79	11	55	66	0	0	34	0.92
650448--650488	20	2.1	19	90	4	64	70	0	0	29	0.87
650455--650508	26	2.1	26	86	6	74	72	0	0	27	0.85
650462--650495	16	2.1	16	88	0	50	76	0	0	23	0.79
650673--650851	43	4.2	42	73	11	148	26	18	25	29	1.98
651270--651350	12	7.2	12	70	21	61	0	34	23	41	1.55
651248--651352	21	5.0	21	80	6	106	0	34	22	42	1.54
653166--653200	16	2.2	16	94	0	61	57	17	8	17	1.64
654396--654484	41	2.1	42	89	2	135	41	16	15	25	1.88
654470--654656	41	4.5	41	85	4	162	35	17	16	30	1.92
654470--654574	43	2.5	42	90	4	167	36	15	14	34	1.87
654551--654894	41	8.4	41	86	3	408	33	18	19	28	1.96
654557--654877	124	2.6	123	84	3	439	34	18	20	27	1.96
654572--654875	165	1.8	164	87	3	450	35	18	20	26	1.95
656299--656376	40	1.9	40	86	2	111	30	16	15	37	1.90
656363--656496	42	3.2	40	74	14	112	26	17	19	36	1.94
656342--656496	84	1.9	82	80	10	181	27	18	17	36	1.94
656388--656537	77	1.9	80	83	10	200	24	21	17	36	1.94
666553--666597	20	2.4	19	89	10	74	33	15	26	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677607--677694	45	2.0	45	95	0	158	38	6	15	38	1.75
678118--678161	23	1.9	23	85	0	61	47	6	0	45	1.29
679174--679293	29	4.1	29	76	6	91	60	8	14	16	1.57
679210--679297	30	3.0	30	83	1	106	60	5	17	17	1.55
680863--680924	3	20.7	3	90	6	99	64	0	0	35	0.94
683018--683046	15	2.0	15	93	6	51	27	10	0	62	1.28
683872--683925	22	2.5	22	84	6	65	57	20	7	14	1.61
683934--683983	24	2.1	24	85	3	66	40	22	18	20	1.92
686193--686246	28	2.0	27	85	10	74	14	7	3	74	1.18
692097--692136	20	2.1	19	86	9	55	75	0	7	17	1.03
692101--692141	19	2.4	16	84	15	55	75	0	7	17	1.02
692205--692502	148	2.0	148	94	1	517	40	9	19	30	1.83
693403--693455	28	1.9	27	92	3	88	43	16	11	28	1.83
702948--702980	12	2.8	12	95	4	59	87	0	6	6	0.65
702947--702980	18	1.9	17	88	5	50	85	0	5	8	0.75
713184--713261	39	2.0	39	100	0	156	23	7	7	61	1.49
713919--713981	21	3.0	21	74	4	74	17	17	26	38	1.92
713971--714064	22	4.4	22	75	12	88	18	18	25	38	1.93
714110--714292	41	4.5	39	95	1	253	20	19	23	36	1.95
714056--714292	82	2.9	82	85	5	241	20	21	22	35	1.96
714135--714280	20	7.2	20	69	4	112	19	20	22	37	1.94
714114--714269	21	7.6	21	71	4	138	21	19	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714400--714448	6	8.2	6	100	0	98	34	48	16	0	1.46
714953--715026	6	12.5	6	98	1	141	0	16	51	32	1.45
715163--715227	19	3.5	19	93	6	107	41	20	21	16	1.90
715163--715288	20	6.5	18	82	9	101	40	21	21	16	1.91
715195--715332	61	2.3	61	94	2	244	39	22	21	16	1.92
715195--715401	61	3.4	61	82	3	177	38	23	20	18	1.94
715260--715398	41	3.4	41	98	0	269	36	23	20	19	1.95
717026--717062	11	3.4	11	88	0	56	18	8	10	62	1.52
717023--717064	11	3.7	12	81	12	52	19	9	11	59	1.59
726977--727029	21	2.6	21	81	3	72	43	0	1	54	1.11
735332--735450	21	5.7	21	90	2	168	19	24	31	24	1.98
735332--735471	21	6.7	21	90	1	122	20	23	32	24	1.98
735332--735477	63	2.3	63	83	2	177	19	22	33	23	1.97
739162--739223	23	2.7	23	90	2	90	20	24	32	22	1.98
746387--746423	17	2.2	17	90	0	56	48	5	2	43	1.40
746518--746628	36	3.1	35	74	14	111	47	4	6	41	1.49
746465--746617	35	4.2	35	74	14	130	49	3	5	41	1.43
747646--747694	19	2.7	17	84	9	53	26	20	28	24	1.99
755952--756076	46	2.8	45	84	4	153	32	18	20	29	1.96
756743--756830	44	2.0	44	97	0	167	35	9	7	47	1.64
757822--757946	34	3.8	34	73	19	129	42	10	16	31	1.81
758303--758345	18	2.5	17	85	7	61	25	4	2	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762573--762634	23	2.7	22	80	9	72	79	6	14	0	0.93
762573--762642	20	3.3	20	82	9	68	78	5	14	1	1.00
764197--764478	36	8.0	36	77	8	285	26	20	14	39	1.90
764155--764340	72	2.6	73	87	4	229	26	20	15	37	1.93
764223--764541	138	2.3	137	82	2	379	28	20	12	38	1.89
764453--764609	68	2.4	68	85	3	212	32	22	8	36	1.85
765903--766027	34	3.8	34	73	19	129	42	10	16	31	1.81
766383--766425	18	2.5	17	85	7	61	25	4	2	67	1.22
768819--768886	31	2.2	31	81	0	82	58	10	4	26	1.49
769366--769412	2	23.5	2	82	8	60	48	2	2	46	1.25
772321--772404	2	42.0	2	100	0	168	50	0	0	50	1.00
777189--777227	18	2.1	19	85	4	53	61	17	0	20	1.34
779347--779722	2	195.5	2	69	24	217	42	2	4	50	1.36
779334--779723	19	21.4	19	70	19	203	42	2	5	50	1.37
779335--779722	33	11.3	33	71	19	199	42	2	5	50	1.37
779347--779722	5	65.2	6	71	22	217	42	2	4	50	1.36
779335--779741	7	55.9	7	72	16	235	42	2	4	50	1.36
779722--779764	23	1.9	23	85	4	61	25	0	4	69	1.07
780644--780768	31	4.0	31	92	2	198	36	23	20	20	1.95
784753--784877	31	4.0	31	86	8	166	38	21	19	20	1.94
785684--785728	21	2.1	21	87	0	63	15	24	28	31	1.96
799497--799754	18	13.4	19	70	20	148	40	2	5	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799510--799752	2	127.5	2	68	23	125	41	2	5	51	1.38
799510--799752	5	42.5	6	70	20	125	41	2	5	51	1.38
800984--801020	6	5.8	6	87	12	56	29	2	0	67	1.04

Tables:   1   2   3   4

The End!