genome.fa.s8770.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008770.1 Hibiscus syriacus cultivar Beakdansim tig00111873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  569103

Tables:   1   2   3   

This is table  2  of  3  ( 297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213308--213497	87	2.2	87	88	2	276	46	6	2	45	1.40
213373--213484	17	6.5	17	66	20	54	44	7	2	45	1.45
213227--213497	16	16.3	16	68	20	78	45	5	2	47	1.37
213453--213500	13	3.5	13	82	5	60	39	4	8	47	1.53
213519--213572	18	3.1	18	86	7	67	48	1	5	44	1.37
213544--213597	17	3.1	17	78	19	58	46	1	1	50	1.23
218056--218088	16	2.1	16	88	11	50	27	6	15	51	1.66
218581--218605	5	5.0	5	100	0	50	60	0	0	40	0.97
223222--223247	13	2.0	13	100	0	52	38	0	0	61	0.96
223235--223883	22	29.5	22	85	3	851	41	0	9	48	1.40
233317--233474	54	3.0	54	77	9	164	34	15	22	27	1.94
233841--233895	22	2.5	22	93	0	101	34	10	14	40	1.81
234510--235077	76	7.5	76	95	0	1012	24	19	22	34	1.96
235019--235348	45	7.3	45	92	1	527	24	20	19	35	1.95
235478--235550	3	24.7	3	82	8	78	34	2	0	63	1.09
235486--235550	26	2.7	24	86	9	87	35	1	0	63	1.04
237140--237164	4	6.2	4	100	0	50	24	0	0	76	0.80
239313--239342	2	15.5	2	93	6	53	50	0	0	50	1.00
241559--241603	20	2.2	20	100	0	90	33	8	15	42	1.78
249272--249310	11	3.5	11	82	3	51	25	5	2	66	1.25
249279--249310	15	2.0	17	88	11	50	25	6	3	65	1.31
249272--249315	22	2.0	22	82	8	54	25	6	4	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252335--252545	67	3.0	71	72	10	191	33	21	18	26	1.96
257738--257768	16	1.9	16	93	0	53	54	6	32	6	1.51
262138--262175	19	2.0	19	100	0	76	26	0	36	36	1.57
264994--265042	20	2.7	17	77	17	53	69	2	2	26	1.10
265028--265081	25	2.2	25	83	6	65	62	0	7	29	1.22
265871--265905	12	2.8	12	95	4	61	48	0	5	45	1.26
266625--266713	19	4.7	19	86	5	119	26	26	15	30	1.96
270532--270786	54	4.7	54	87	1	334	38	19	14	27	1.91
270541--270626	27	3.2	27	65	6	66	40	19	12	26	1.88
270749--270823	37	2.0	37	92	0	123	38	22	16	22	1.92
270695--270877	91	2.0	91	86	0	258	38	18	15	27	1.91
270786--271042	54	4.8	54	80	8	265	36	19	14	28	1.92
270811--270892	27	3.0	27	63	19	62	39	14	15	30	1.88
270647--270931	145	2.0	145	90	2	448	37	18	16	27	1.92
270590--270983	199	2.0	199	85	3	542	37	19	15	27	1.92
270786--271042	108	2.4	108	83	5	297	36	19	14	28	1.92
270533--270994	253	1.8	253	86	2	678	37	19	15	27	1.91
276752--277103	54	6.5	54	88	0	463	34	20	17	26	1.95
278396--278483	38	2.3	38	84	0	104	25	30	12	31	1.92
278382--278464	19	4.4	19	84	0	94	21	32	14	31	1.93
278415--278473	19	3.1	19	80	9	75	25	32	10	32	1.89
279534--279597	26	2.4	26	79	7	76	45	18	14	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287053--287083	15	2.1	15	93	0	53	35	19	3	41	1.67
289138--289177	20	1.9	22	90	10	66	37	40	10	12	1.77
290392--290434	22	2.0	22	85	0	59	41	13	6	37	1.72
293085--293151	2	34.0	2	93	3	118	50	1	0	47	1.10
293462--293508	20	2.3	20	85	0	58	31	17	12	38	1.87
301806--301851	22	2.0	23	83	4	58	52	0	2	45	1.13
302091--302120	3	10.0	3	92	0	51	63	0	3	33	1.11
305937--306043	42	2.5	42	89	1	160	18	11	43	26	1.83
306723--306796	38	1.9	38	94	0	130	17	22	10	48	1.78
311075--311166	39	2.4	39	88	0	139	43	15	11	29	1.82
316676--316716	19	2.2	19	90	0	64	19	31	21	26	1.97
317604--317650	18	2.6	19	83	10	62	63	4	8	23	1.40
321566--321605	19	2.1	19	100	0	80	17	37	20	25	1.94
322708--322752	21	2.1	21	87	0	63	31	28	24	15	1.96
324046--324169	30	4.1	30	94	2	205	20	22	26	29	1.99
327601--327634	18	1.9	18	88	5	52	38	0	8	52	1.33
329432--329592	21	7.8	21	65	9	80	20	19	23	36	1.95
329436--329656	41	5.4	41	85	6	297	18	19	24	38	1.93
329604--329675	21	3.5	21	71	17	69	16	19	27	36	1.93
329436--329674	123	1.9	123	90	3	383	17	19	24	37	1.94
329463--329656	82	2.4	82	95	0	343	17	19	24	39	1.92
329726--329774	6	8.2	6	100	0	98	34	48	16	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330262--330413	6	26.5	6	95	4	255	0	17	52	30	1.44
330500--330543	21	2.1	21	86	0	61	34	29	15	20	1.94
330925--330962	16	2.4	17	86	8	53	52	2	5	39	1.38
331279--331367	30	3.0	30	91	4	137	39	22	0	38	1.54
331983--332038	24	2.3	24	100	0	112	28	17	16	37	1.91
340112--340155	12	3.7	12	75	0	52	25	13	13	47	1.79
340108--340157	24	2.1	24	96	0	91	22	12	16	50	1.77
349940--349978	20	2.0	20	89	0	60	33	23	10	33	1.88
356116--356173	22	2.6	22	88	0	80	18	24	31	25	1.98
359954--359993	21	1.9	21	90	10	64	27	5	10	57	1.52
361979--362022	21	2.2	20	88	8	63	9	22	43	25	1.82
361990--362036	20	2.3	21	88	3	69	12	27	29	29	1.93
386722--386773	20	2.6	20	78	6	52	44	19	13	23	1.86
403500--403550	15	3.4	15	73	10	50	5	13	47	33	1.67
403507--403563	30	1.9	30	92	7	98	5	15	47	31	1.68
406714--406787	29	2.6	29	81	14	98	56	14	4	24	1.56
406957--407053	32	3.1	30	80	11	97	53	11	8	26	1.64
407303--407358	23	2.4	23	90	0	85	42	3	14	39	1.63
407849--407908	20	3.0	20	85	0	75	35	31	8	25	1.85
407943--408105	20	8.0	21	73	13	92	31	23	11	33	1.90
407952--408101	60	2.5	60	78	5	142	30	23	12	34	1.91
408285--408322	16	2.5	15	84	12	51	28	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409055--409106	23	2.3	23	93	0	86	21	19	17	42	1.89
411353--411387	18	2.0	17	88	5	52	54	25	2	17	1.57
411631--411671	20	2.0	21	90	4	66	43	21	12	21	1.85
413233--413330	21	4.7	21	87	3	126	27	18	33	20	1.96
413433--413473	12	3.4	12	82	0	55	65	4	0	29	1.13
413583--413622	21	1.9	21	89	0	62	40	27	10	22	1.86
413860--413958	42	2.4	42	87	0	135	19	20	33	27	1.96
415482--415520	20	2.0	20	94	0	69	12	15	17	53	1.72
415489--415531	20	2.2	20	86	0	59	20	11	13	53	1.71
415866--415934	22	3.1	22	87	0	93	23	18	42	15	1.89
416063--416107	19	2.4	19	96	0	81	35	17	22	24	1.95
416101--416151	20	2.5	20	90	0	75	21	11	21	45	1.84
419356--419396	21	2.0	21	90	0	64	41	19	4	34	1.73
420502--420535	14	2.4	14	100	0	68	26	29	8	35	1.87
420567--420643	30	2.5	30	91	2	118	33	11	27	27	1.91
420806--420837	2	16.0	2	100	0	64	50	0	0	50	1.00
442414--442456	22	2.0	22	82	17	54	32	39	4	23	1.75
446529--446613	28	3.0	28	98	0	161	41	14	11	32	1.82
447754--447942	104	1.8	104	91	0	315	38	16	15	29	1.89
450605--450726	65	1.9	65	96	0	226	39	18	20	22	1.93
453775--453989	118	1.8	118	89	0	340	35	12	20	31	1.90
453767--454025	118	2.2	118	82	1	331	37	13	19	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453877--454361	226	2.1	226	89	0	738	38	14	15	31	1.88
457191--457229	21	2.0	20	90	10	62	28	15	20	35	1.93
456609--457677	447	2.4	448	83	4	1298	29	13	15	42	1.84
457754--457825	28	2.6	27	91	2	117	36	9	5	48	1.60
457736--457852	19	6.3	18	70	13	76	31	11	8	48	1.69
459085--459132	12	4.0	12	83	0	60	54	4	12	29	1.56
465586--465655	29	2.3	30	82	4	97	28	1	1	68	1.06
465731--465891	29	5.2	31	78	13	129	42	4	0	52	1.21
465730--465858	64	2.0	63	88	7	188	44	3	0	51	1.19
465731--465921	95	2.0	95	81	8	219	45	3	0	50	1.19

Tables:   1   2   3