genome.fa.s8770.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008770.1 Hibiscus syriacus cultivar Beakdansim tig00111873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  569103

Tables:   1   2   3   

This is table  3  of  3  ( 297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465881--465964	33	2.5	34	80	7	100	57	0	1	41	1.06
465995--466064	31	2.3	31	82	9	81	54	1	5	38	1.33
466051--466104	27	1.9	29	85	7	76	62	3	3	29	1.29
468023--468064	22	2.0	22	86	9	61	28	2	0	69	1.01
469292--469597	44	7.1	44	73	15	136	49	6	19	25	1.72
469287--469685	43	9.3	41	73	11	268	48	6	18	26	1.72
469336--469702	83	4.3	84	77	11	259	49	6	17	25	1.71
473623--473684	24	2.5	25	79	7	65	25	4	0	69	1.08
474727--474793	29	2.2	32	81	10	86	55	4	11	28	1.56
475390--475439	16	2.7	19	73	20	52	66	0	8	26	1.19
476530--476569	20	2.0	20	95	4	73	40	5	35	20	1.74
478832--478869	18	2.1	18	95	0	67	31	13	31	23	1.93
500330--500375	24	1.9	24	82	8	58	26	17	15	41	1.88
500564--500620	23	2.5	23	79	0	69	42	15	12	29	1.84
501479--501611	65	2.0	65	98	0	257	35	11	12	40	1.79
503868--503901	16	2.1	17	88	5	52	64	0	0	35	0.94
507252--507531	138	2.0	141	94	3	494	36	18	15	29	1.91
512541--512590	23	2.2	23	85	0	64	38	12	16	34	1.85
512628--512687	23	2.6	23	86	0	84	40	8	16	35	1.79
512523--512780	87	3.0	87	92	0	417	43	10	13	32	1.78
512715--512764	23	2.2	23	85	0	64	40	10	16	34	1.81
513241--513817	112	5.2	112	90	1	890	43	12	11	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514119--514327	87	2.4	87	90	0	328	43	9	14	33	1.77
514644--514716	36	2.0	36	94	0	128	32	15	13	38	1.86
514680--514951	92	3.0	92	89	2	413	44	11	12	31	1.77
515352--515556	87	2.4	87	87	1	295	45	9	12	32	1.73
515797--516032	111	2.1	113	88	3	352	44	11	10	34	1.74
516374--516416	20	2.2	20	100	0	86	34	11	4	48	1.60
517983--518052	35	2.0	35	94	0	122	32	8	34	24	1.86
520220--520282	29	2.2	28	91	5	108	49	4	17	28	1.67
521846--521879	16	2.1	17	88	5	52	35	0	0	64	0.94
524081--524105	13	1.9	13	100	0	50	76	0	16	8	1.02
526857--526930	34	2.2	34	78	9	80	45	21	6	25	1.76
527240--527332	36	2.6	35	81	3	123	29	17	10	43	1.82
527376--527670	132	2.2	130	80	9	346	25	16	15	41	1.88
527376--527670	66	4.5	63	77	11	274	25	16	15	41	1.88
527705--527915	83	2.5	83	80	3	217	25	32	18	23	1.97
528120--528171	14	3.8	14	73	21	56	32	0	0	67	0.91
528119--528171	20	2.5	22	79	14	76	32	0	0	67	0.91
529751--529834	30	2.8	30	77	0	96	19	11	9	59	1.59
531892--532516	108	5.6	106	67	13	333	38	13	16	31	1.88
532052--532634	118	5.1	117	68	11	436	37	13	16	32	1.88
531779--532675	226	4.0	226	90	1	1332	38	13	16	31	1.87
536691--536741	19	2.7	19	85	8	70	25	15	35	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536585--536792	65	3.2	63	79	13	201	27	16	25	29	1.97
537390--537427	8	4.8	8	90	0	58	50	34	2	13	1.55
543171--543210	21	1.9	21	85	10	55	35	10	2	52	1.48
545261--545311	19	2.7	19	85	8	70	25	15	35	23	1.94
545154--545313	65	2.5	65	84	5	200	28	16	26	29	1.97
545866--545907	19	2.2	20	91	4	68	21	16	9	52	1.72
549980--550396	230	1.8	230	87	3	633	34	21	7	36	1.83
562823--562921	50	1.9	52	85	4	139	47	13	25	14	1.80
562908--562941	18	1.9	18	88	5	52	73	0	23	2	0.97
563687--564330	105	6.2	105	89	5	933	33	26	18	21	1.96
563687--564332	311	2.1	306	88	6	944	33	26	18	21	1.96
566594--566970	190	2.0	192	86	2	526	32	12	11	43	1.79
567651--567701	22	2.4	21	87	6	68	29	21	1	47	1.62

Tables:   1   2   3

The End!