Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008802.1 Hibiscus syriacus cultivar Beakdansim tig00111952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1147353

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1094453--1094526
20
3.9
18
79
11
60
41
6
1
50
1.37
1095627--1095663
16
2.2
17
90
4
58
16
0
0
83
0.64
1095562--1095724
61
2.6
61
80
5
168
19
6
3
70
1.25
1095791--1095818
14
2.0
14
100
0
56
21
0
0
78
0.75
1095966--1096000
12
2.8
12
91
4
52
45
17
2
34
1.63
1096405--1096438
17
2.1
17
88
5
52
29
23
0
47
1.52
1097175--1097289
23
5.5
22
66
26
63
52
0
3
43
1.24
1097160--1097289
41
3.2
41
71
18
110
51
0
3
44
1.22
1097275--1097348
25
2.8
28
74
16
75
44
1
1
52
1.17
1098634--1098828
2
101.5
2
67
11
68
2
62
0
35
1.09
1098638--1098828
12
16.8
11
70
18
83
2
62
0
35
1.09
1098681--1098828
34
4.1
34
77
19
149
0
65
0
33
0.98
1098681--1098812
46
2.7
47
85
9
160
0
66
0
33
0.92
1098632--1098820
76
2.5
74
83
8
215
2
62
0
34
1.09
1098689--1098813
44
2.7
45
83
13
157
0
68
0
32
0.90
1099233--1099352
22
5.7
21
78
15
117
23
34
20
21
1.97
1099233--1099353
42
2.9
42
94
1
206
23
33
20
22
1.97
1099372--1099464
20
4.7
20
86
0
114
21
24
21
32
1.98
1100260--1100370
57
1.9
57
90
0
177
43
18
11
27
1.84
1101789--1101818
13
2.4
13
94
5
53
76
6
16
0
0.99
1111102--1111173
36
2.0
36
97
0
135
30
6
30
31
1.84
1111735--1111784
20
2.5
20
93
3
82
40
0
10
50
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1112438--1112508
21
3.4
21
82
7
81
42
19
0
38
1.52
1113115--1113236
64
1.9
62
86
6
174
44
4
6
44
1.51
1113211--1113307
33
2.9
33
74
8
90
44
5
6
44
1.51
1115144--1115283
57
2.5
56
82
3
176
38
7
11
42
1.70
1119809--1120177
192
1.9
193
89
1
571
34
18
19
27
1.95
1120002--1120634
255
2.5
252
80
5
727
34
16
15
33
1.90
1120514--1120862
177
2.0
176
87
2
504
34
19
17
28
1.95
1128431--1128675
126
1.9
126
81
9
295
40
15
9
33
1.81
1130456--1130485
15
1.9
16
93
6
53
26
20
20
33
1.97
1130609--1130656
6
8.3
6
86
9
55
81
2
0
16
0.79
1130610--1130650
16
2.4
17
84
12
57
82
2
0
14
0.76
1130608--1130650
22
2.0
22
90
0
68
83
2
0
13
0.74
1133358--1133416
12
5.3
11
75
15
50
47
6
5
40
1.52
1133430--1133624
98
2.0
97
86
5
275
33
5
16
44
1.71
1133693--1133799
2
54.0
2
73
15
80
44
2
7
44
1.46
1133678--1133727
21
2.4
21
80
6
57
48
6
4
42
1.46
1136753--1136802
21
2.4
21
90
3
75
26
18
10
46
1.80
1142564--1142620
18
3.1
18
94
2
96
33
5
7
54
1.50
1142573--1142628
18
3.1
18
87
10
71
33
7
5
53
1.51

Tables:   1   2   3   4   5   6

The End!