genome.fa.s8806.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008806.1 Hibiscus syriacus cultivar Beakdansim tig00111959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  454619

Tables:   1   2   3   

This is table  3  of  3  ( 309 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358563--358643	25	3.2	24	68	22	67	33	14	8	43	1.76
358539--358680	51	2.8	51	89	1	203	35	13	7	43	1.73
361562--361600	3	13.0	3	88	0	51	33	58	0	7	1.26
361547--361596	21	2.4	21	89	0	73	34	52	2	12	1.50
361545--361600	15	3.7	15	80	0	58	33	51	1	12	1.50
361557--361600	9	4.9	9	82	0	52	34	54	0	11	1.36
363906--363940	16	2.2	16	89	0	52	8	31	2	57	1.44
364664--365533	75	11.8	74	83	4	1060	40	13	13	32	1.83
364664--365533	147	5.9	146	86	3	1082	40	13	13	32	1.83
364664--365533	221	3.9	220	85	3	1106	40	13	13	32	1.83
365544--365585	21	2.0	21	90	0	66	38	11	11	38	1.79
366377--366439	19	3.5	18	81	10	76	23	1	0	74	0.90
366959--367051	21	4.5	21	81	4	109	39	17	24	18	1.91
366959--367051	41	2.3	41	98	0	177	39	17	24	18	1.91
366978--367112	41	3.3	41	82	4	130	37	20	20	21	1.94
367040--367133	20	4.7	20	77	7	82	32	24	17	25	1.96
367321--367364	22	2.0	22	95	0	79	20	45	15	18	1.85
368978--369022	18	2.5	18	81	0	54	26	46	13	13	1.80
369503--369560	20	2.9	21	75	15	68	37	20	24	17	1.93
369549--369606	14	3.9	14	75	16	62	48	24	17	10	1.78
369495--369628	19	7.6	18	70	18	77	42	22	20	14	1.88
369533--369623	32	2.8	33	91	3	157	47	21	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369624--369682	18	3.6	16	74	21	59	8	16	27	47	1.76
369639--369696	14	3.9	14	77	16	62	8	15	25	50	1.73
369634--369712	32	2.4	33	93	2	133	10	17	24	48	1.78
369697--369751	20	2.8	19	89	5	83	16	25	23	34	1.95
371742--371914	19	9.6	19	87	10	258	46	17	21	13	1.83
371742--371914	52	3.2	52	94	4	283	46	17	21	13	1.83
371933--371990	20	2.9	20	94	0	98	17	22	22	37	1.93
373051--373104	24	2.2	24	90	0	81	24	16	20	38	1.92
375589--375715	33	3.8	33	86	4	193	43	19	22	14	1.88
375593--375722	66	2.0	66	96	0	242	43	19	21	16	1.88
375715--375757	20	2.2	20	87	4	61	16	18	23	41	1.89
375743--375776	14	2.4	14	85	0	50	8	23	20	47	1.78
375898--375934	14	2.6	14	91	0	65	45	24	0	29	1.53
377290--377356	21	3.2	21	68	4	55	19	20	35	23	1.95
377290--377412	42	2.9	41	79	7	113	22	17	36	23	1.94
379437--379535	33	3.0	33	89	1	144	39	26	23	11	1.88
379412--379577	20	9.1	19	73	16	127	43	22	21	12	1.85
379573--379636	19	3.4	19	95	0	101	9	15	25	50	1.74
380190--380283	20	4.7	20	80	2	89	24	17	24	34	1.96
380272--380364	20	4.5	21	78	4	100	17	24	18	39	1.91
380211--380345	41	3.3	41	84	4	148	20	20	20	38	1.94
380272--380364	41	2.3	41	100	0	186	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385881--386158	45	6.2	45	84	1	306	33	17	8	40	1.80
385993--386191	90	2.2	90	82	1	238	32	19	10	37	1.86
386817--386873	23	2.6	23	81	8	66	21	33	17	28	1.96
392902--393160	45	5.8	43	77	13	184	33	17	10	38	1.84
392951--393201	45	5.6	45	81	4	258	31	19	11	37	1.88
392952--393201	135	1.9	135	81	5	308	31	19	12	36	1.88
398980--399016	19	1.9	19	94	0	65	59	10	0	29	1.31
399086--399192	33	3.2	35	72	20	104	49	2	1	45	1.27
402687--402754	28	2.4	28	87	0	100	38	20	11	29	1.88
405453--405496	16	2.7	16	89	3	61	43	0	2	54	1.12
405443--405485	17	2.5	17	85	11	52	51	0	2	46	1.13
405460--405497	14	2.6	15	83	8	51	42	0	2	55	1.14
413287--413323	19	1.9	19	94	0	65	27	18	18	35	1.95
414235--414273	14	2.6	15	88	8	53	69	5	0	25	1.09
420362--420696	49	6.8	49	92	1	546	24	21	15	38	1.92
426565--426703	49	2.8	49	83	4	174	28	16	12	42	1.85
429287--429606	108	3.0	108	92	0	525	30	11	22	35	1.89
431375--431449	28	2.7	28	83	2	89	30	16	29	24	1.96
433997--434075	39	2.0	39	95	0	140	26	35	13	24	1.93
435381--435419	12	3.2	12	96	0	69	43	30	7	17	1.77
435527--435553	13	2.1	13	100	0	54	37	0	14	48	1.45
442404--442440	12	3.1	12	88	0	56	32	54	0	13	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442403--442454	24	2.2	23	82	3	59	32	48	0	19	1.49
443640--443685	13	3.5	13	84	3	56	15	0	26	58	1.37
450270--450352	39	2.2	38	78	12	89	50	4	1	43	1.31

Tables:   1   2   3

The End!