genome.fa.s8812.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008812.1 Hibiscus syriacus cultivar Beakdansim tig00111973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  944649

Tables:   1   2   3   4   

This is table  2  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296782--296839	23	2.4	23	88	5	80	48	0	5	46	1.24
296784--297067	60	4.5	61	73	15	190	46	2	7	43	1.45
296844--296910	25	2.8	24	82	12	84	46	1	7	44	1.40
296851--296931	28	3.0	28	89	5	114	48	2	6	43	1.41
296892--297090	37	5.6	37	73	15	125	45	4	7	42	1.51
296931--296995	27	2.4	27	92	7	107	44	4	7	43	1.53
296866--297029	64	2.5	65	88	7	262	46	3	7	42	1.47
296995--297044	26	1.9	26	83	0	64	46	2	8	44	1.44
296958--297090	37	3.6	36	85	9	160	43	3	8	44	1.52
296962--297105	74	1.9	74	80	8	168	45	3	8	42	1.51
298304--298338	15	2.3	15	90	0	52	28	11	0	60	1.32
298354--298380	14	1.9	14	100	0	54	14	7	0	77	0.97
302414--302691	99	2.8	99	92	0	448	33	16	17	32	1.93
305051--305384	37	8.9	37	85	6	392	45	5	6	42	1.53
305376--305412	15	2.4	16	86	13	51	32	2	2	62	1.23
305498--305560	31	2.1	30	87	3	90	25	30	31	12	1.93
306685--306717	16	2.0	17	94	5	59	18	6	0	75	1.00
307169--307232	24	2.9	21	78	19	67	40	3	0	56	1.15
307208--307245	12	3.2	12	96	3	69	31	0	0	68	0.90
307184--307245	11	5.3	11	83	16	72	33	3	0	62	1.11
307730--307900	85	2.0	82	88	3	252	50	2	9	36	1.51
310875--310914	21	1.9	21	90	10	64	57	7	5	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312271--312307	16	2.3	16	95	0	65	32	0	37	29	1.58
320954--321026	31	2.4	31	88	4	94	52	10	10	26	1.69
321697--321773	23	3.4	24	75	13	65	40	2	2	54	1.28
321717--321776	23	2.6	23	84	5	77	38	1	1	58	1.18
321708--321791	19	3.9	22	76	19	79	38	2	2	57	1.25
321748--321791	19	2.3	19	100	0	88	38	0	4	56	1.20
321759--321819	19	3.4	16	80	17	59	45	1	1	50	1.21
321869--321909	19	2.2	20	79	16	52	58	0	2	39	1.11
324825--324913	30	3.0	29	73	12	83	38	5	17	38	1.74
334214--334343	34	3.6	34	83	13	140	47	4	6	41	1.49
334222--334555	38	8.6	39	81	13	336	47	4	5	42	1.47
334329--334355	2	13.5	2	100	0	54	51	0	0	48	1.00
334254--334555	88	3.8	84	83	11	352	47	3	5	43	1.46
334445--334500	28	1.9	28	85	7	76	42	3	8	44	1.53
334638--334680	20	2.1	20	86	4	59	13	2	4	79	1.00
335395--335490	30	3.2	30	81	0	111	28	19	40	11	1.86
335834--335871	15	2.5	15	86	4	58	26	13	2	57	1.49
338878--339014	65	2.1	65	87	5	197	29	21	17	31	1.96
338878--339033	65	2.4	64	86	5	188	30	20	17	31	1.96
343434--343529	44	2.2	43	87	5	131	27	23	21	27	1.99
343457--343532	23	3.4	22	78	7	91	26	25	22	26	2.00
346050--346186	65	2.1	65	91	2	222	27	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346346--346376	16	1.9	16	93	0	53	19	32	25	22	1.97
346578--346634	15	3.7	15	77	9	69	21	33	28	17	1.96
348913--349407	85	5.8	85	84	2	598	35	20	17	26	1.94
348913--349407	170	2.9	169	86	3	679	35	20	17	26	1.94
350071--350362	38	7.7	38	87	6	389	46	4	6	43	1.47
350038--350362	76	4.3	75	85	8	394	46	4	6	43	1.47
352548--352608	23	2.7	23	86	0	95	31	24	27	16	1.96
353109--353134	2	13.0	2	100	0	52	50	0	0	50	1.00
357186--357218	13	2.5	13	95	0	57	42	24	9	24	1.83
357564--357629	23	2.9	23	86	0	96	30	24	27	18	1.98
360966--360998	2	16.5	2	100	0	66	51	0	0	48	1.00
363121--363168	20	2.5	19	83	9	62	25	14	4	56	1.56
365774--365811	19	2.0	19	94	0	67	18	10	5	65	1.41
367870--367973	36	2.9	35	83	7	138	20	23	18	38	1.93
376907--376972	31	2.1	31	85	0	87	53	7	9	30	1.60
377363--377397	17	2.1	17	89	5	54	51	2	2	42	1.31
377890--377958	32	2.1	32	83	5	84	23	24	1	50	1.57
378750--378821	33	2.2	33	89	0	108	33	8	36	22	1.84
381381--381425	21	2.1	21	84	8	56	26	8	2	62	1.37
389016--389065	23	2.1	24	82	14	59	30	8	0	62	1.24
389655--389702	21	2.3	21	88	0	78	20	33	14	31	1.93
389777--389845	21	3.3	21	91	0	102	30	37	2	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391513--391561	18	2.7	18	78	15	55	30	0	8	61	1.25
392015--392067	21	2.5	21	78	0	61	20	24	18	35	1.95
392057--392190	20	6.7	20	89	1	205	37	20	20	21	1.95
392755--392822	20	3.5	19	80	6	73	16	20	25	38	1.92
394030--394114	33	2.5	33	90	1	125	15	23	17	43	1.87
394099--394185	20	4.3	20	86	2	113	20	21	21	35	1.96
396371--396397	14	1.9	14	100	0	54	7	11	29	51	1.64
396599--396652	24	2.2	24	93	0	90	40	22	16	20	1.91
396599--396666	24	2.8	24	84	0	64	38	22	16	23	1.93
397501--397538	20	1.9	20	88	0	58	23	15	26	34	1.95
397529--397581	20	2.7	20	96	0	97	18	20	22	37	1.94
397578--397623	21	2.2	21	88	0	65	36	17	28	17	1.92
399265--399323	25	2.4	25	100	0	118	50	13	16	18	1.77
399851--399903	23	2.3	23	77	3	63	54	3	16	24	1.59
400601--400647	19	2.6	17	80	16	51	14	4	23	57	1.55
418012--418049	16	2.4	16	87	12	60	0	21	10	68	1.19
421421--421557	44	3.1	44	89	1	204	24	19	13	41	1.88
421489--421635	70	2.1	70	87	1	206	23	21	14	40	1.90
421529--421583	25	2.2	25	100	0	110	20	27	16	36	1.93
421446--421671	114	2.0	113	89	0	344	25	20	13	40	1.89
421554--421883	44	7.5	44	87	2	468	25	21	12	41	1.88
421554--421883	173	1.9	175	89	2	511	25	21	12	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426779--427086	44	7.0	44	91	0	483	25	23	12	39	1.89
426779--427086	131	2.3	132	91	2	478	25	23	12	39	1.89
428598--428769	75	2.3	72	84	4	218	31	19	11	37	1.88
428592--429023	37	12.0	36	68	10	197	29	20	10	39	1.87
428637--428810	75	2.4	74	84	5	212	28	20	13	37	1.90
428784--429107	71	4.6	71	86	3	395	28	21	9	40	1.84
428713--429024	142	2.2	143	78	6	330	28	20	10	40	1.86
428750--429035	34	8.1	34	67	8	151	26	21	10	41	1.85
428966--429073	36	3.0	36	72	13	107	32	21	8	37	1.83
429855--430402	241	2.3	242	82	4	633	33	19	18	28	1.95
432897--433044	49	3.1	49	62	16	121	35	20	11	32	1.88
432785--433044	98	2.7	93	89	2	385	36	20	11	31	1.87
435125--435493	182	2.0	183	99	0	731	35	16	13	33	1.88
435473--435506	13	2.6	13	95	0	59	17	20	0	61	1.34
437189--437230	16	2.6	16	85	7	59	21	2	0	76	0.90
437189--437246	22	2.8	22	79	7	59	24	1	0	74	0.92
437181--437264	17	5.0	16	75	10	53	29	2	0	67	1.03
437574--437655	7	11.0	7	72	19	51	19	4	0	75	0.98
437574--437661	16	4.4	21	68	28	68	20	4	0	75	0.98
437616--437671	26	2.2	26	87	12	80	23	3	0	73	0.99
437630--437682	16	3.4	16	78	5	72	24	0	0	75	0.80
437578--437660	44	1.9	43	85	2	112	19	4	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441513--441633	43	2.8	43	89	0	179	32	30	15	21	1.95
441605--441838	130	1.8	128	83	6	314	32	22	19	25	1.97
442023--442256	116	2.0	116	88	0	351	32	24	18	24	1.97
442792--442845	23	2.3	23	81	9	65	37	0	0	62	0.95
442792--442846	12	4.7	12	77	11	60	36	0	0	63	0.95
451818--451903	30	3.0	28	83	8	109	41	8	5	44	1.58
451986--452060	29	2.6	29	77	6	71	45	5	5	44	1.49
456614--456649	18	1.9	19	88	5	56	61	0	0	38	0.96
456614--456652	10	4.1	10	83	12	55	58	0	0	41	0.98
456673--456697	13	1.9	13	100	0	50	32	0	0	68	0.90

Tables:   1   2   3   4