genome.fa.s8812.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008812.1 Hibiscus syriacus cultivar Beakdansim tig00111973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  944649

Tables:   1   2   3   4   

This is table  4  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675391--675562	40	4.3	40	83	5	224	22	17	28	31	1.97
696014--696075	32	1.9	32	93	0	106	24	27	11	37	1.89
699555--699679	32	3.9	32	85	2	180	24	28	11	36	1.90
699562--699689	63	2.0	63	100	0	256	25	28	10	35	1.90
702892--702932	21	2.0	21	100	0	82	31	4	29	34	1.79
703972--704077	36	3.1	36	81	6	130	38	17	23	19	1.93
704233--704273	21	2.0	21	100	0	82	31	4	29	34	1.79
715738--715860	64	1.9	63	91	1	201	40	5	21	31	1.77
721411--721435	2	12.5	2	100	0	50	48	0	0	52	1.00
722077--722132	18	3.3	18	76	23	75	19	44	21	14	1.86
722065--722131	33	2.0	34	94	2	118	22	40	22	14	1.90
722813--722883	31	2.3	29	79	15	72	56	8	7	28	1.55
732118--732176	27	2.2	27	93	0	100	23	13	30	32	1.93
734720--734763	15	2.9	14	83	16	52	70	9	15	4	1.30
741401--741438	19	2.0	19	89	0	58	47	5	0	47	1.24
744093--744158	35	2.0	32	82	8	78	65	3	25	6	1.30
745014--745054	15	2.7	16	81	7	50	29	0	7	63	1.21
747963--748063	50	2.0	49	84	5	132	23	11	12	51	1.73
749669--751907	182	12.6	182	90	5	3454	28	17	13	41	1.86
749669--751907	358	6.3	360	89	5	3389	28	17	13	41	1.86
754116--754148	17	1.9	17	100	0	66	48	6	0	45	1.27
754133--754660	181	2.9	181	93	0	907	29	16	12	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759112--759192	12	7.5	12	66	23	54	3	45	0	50	1.19
759097--759213	32	3.7	33	89	7	188	3	46	0	50	1.18
759401--759466	33	2.0	33	90	0	105	22	45	0	31	1.53
759503--759543	21	2.0	21	90	0	64	19	26	12	41	1.87
761792--761834	20	2.3	18	85	14	61	20	16	11	51	1.75
761764--762236	181	2.6	181	88	2	682	27	16	13	43	1.85
765039--765145	41	2.6	42	87	10	143	26	14	28	30	1.95
771725--771762	17	2.2	17	86	9	51	13	13	15	57	1.65
772923--773010	9	9.3	9	68	18	54	7	13	1	77	1.04
772959--773006	19	2.7	18	81	15	55	8	10	0	81	0.88
772965--773024	19	3.1	19	85	4	66	8	15	0	76	1.00
777017--777059	17	2.6	16	78	10	50	58	0	20	20	1.40
778875--778903	12	2.3	13	94	5	51	17	0	3	79	0.87
784728--784936	55	3.8	55	87	1	287	36	16	15	31	1.90
784728--784937	109	1.9	109	87	1	305	36	16	15	31	1.90
806124--806164	21	2.1	19	86	9	55	29	19	19	31	1.96
806185--806220	12	3.0	12	95	0	63	36	0	22	41	1.54
812445--812469	13	1.9	13	100	0	50	16	8	12	64	1.49
814316--814360	17	2.6	18	82	7	56	42	11	13	33	1.79
824469--824547	35	2.2	36	93	2	133	26	3	37	31	1.74
824487--824549	13	5.2	12	75	19	51	28	3	38	30	1.73
836707--836767	27	2.3	27	91	0	95	37	19	13	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844418--844470	23	2.2	24	90	3	81	62	11	16	9	1.54
849235--849263	15	2.0	15	93	6	51	75	3	20	0	0.94
850622--850771	80	1.9	78	81	10	180	42	8	5	44	1.56
866960--866987	10	2.8	10	100	0	56	50	17	21	10	1.77
867776--867813	19	2.0	20	89	5	60	36	13	5	44	1.66
878464--878516	22	2.6	21	88	8	74	35	13	5	45	1.67
880205--880270	30	2.3	27	80	14	80	9	10	3	77	1.10
886348--886394	20	2.3	20	96	0	85	38	19	25	17	1.92
891401--891430	13	2.4	13	94	5	53	43	0	30	26	1.55
896845--896877	16	2.1	16	100	0	66	12	9	48	30	1.71
897131--897180	19	2.5	20	87	3	66	46	6	16	32	1.71
898454--898481	13	2.2	13	100	0	56	35	0	39	25	1.56
898826--898868	20	2.2	20	87	4	61	51	6	9	32	1.61
899563--899601	20	1.9	21	84	5	53	48	7	17	25	1.74
902134--902168	16	2.1	17	89	10	54	0	11	5	82	0.82
902919--902956	20	1.9	20	100	0	76	36	5	13	44	1.66
902920--902970	19	2.6	20	87	3	68	41	5	15	37	1.72
908225--908270	23	2.0	21	84	12	56	32	13	17	36	1.88
913252--913321	13	6.0	11	70	16	52	2	18	2	75	1.05
913266--913321	18	3.1	18	82	17	71	0	19	1	78	0.84
915672--915700	15	2.0	15	93	6	51	0	20	3	75	0.94
918977--919027	19	2.6	20	84	3	68	43	3	15	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920923--920965	20	2.2	20	87	4	61	51	6	9	32	1.61
922909--922941	16	2.1	16	100	0	66	42	6	18	33	1.75
928346--928378	16	2.1	16	100	0	66	42	6	18	33	1.75
928914--928952	20	2.0	20	90	5	62	38	10	17	33	1.84
936117--936146	13	2.4	13	94	5	53	43	0	30	26	1.55
939686--939715	13	2.4	13	94	5	53	26	30	0	43	1.55

Tables:   1   2   3   4

The End!