genome.fa.s8817.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008817.1 Hibiscus syriacus cultivar Beakdansim tig00111983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1047399

Tables:   1   2   3   4   

This is table  4  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805203--805267	29	2.2	29	86	5	85	50	3	12	33	1.55
824076--824139	33	2.0	31	84	6	83	51	17	6	25	1.68
825720--825780	30	2.0	30	93	0	104	42	27	4	24	1.75
833840--834019	38	4.8	38	79	3	177	43	4	5	46	1.47
833911--834007	19	5.2	18	63	10	52	46	3	2	48	1.29
833840--834019	75	2.4	76	83	2	229	43	4	5	46	1.47
844289--844327	19	2.1	19	100	0	78	25	10	15	48	1.76
847399--847429	2	15.5	2	100	0	62	51	0	0	48	1.00
854872--854974	41	2.6	39	81	14	113	33	7	0	59	1.26
858355--858419	23	2.8	23	83	0	85	32	23	26	18	1.97
859840--859884	21	2.1	21	87	0	63	15	24	28	31	1.96
876986--877022	18	2.0	20	89	10	60	48	0	2	48	1.15
881143--881175	16	2.1	16	94	0	57	51	0	0	48	1.00
885893--885923	2	15.5	2	100	0	62	51	0	0	48	1.00
888369--888415	24	2.0	24	91	0	76	36	25	10	27	1.89
898404--898555	76	2.0	76	100	0	304	23	22	23	30	1.99
900679--900813	66	2.0	68	97	2	256	30	16	20	32	1.95
901312--901353	4	10.5	4	100	0	84	50	0	23	26	1.50
908719--908752	17	2.1	17	88	5	52	73	2	0	23	0.97
909321--909771	231	2.0	229	94	0	794	45	7	7	39	1.61
909837--909883	20	2.4	19	89	10	76	55	10	17	17	1.69
910004--910049	20	2.4	18	79	13	56	54	8	17	19	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912348--912413	33	2.0	33	87	0	96	28	1	45	24	1.62
914207--914250	19	2.4	19	92	3	72	31	2	9	56	1.43
914333--915551	198	6.1	198	97	1	2327	37	14	15	32	1.88
917015--917097	21	4.4	18	67	22	55	34	9	34	20	1.85
917015--917112	6	16.3	6	78	0	61	35	8	34	21	1.83
917030--917116	3	29.0	3	75	0	75	34	6	34	24	1.82
917018--917108	42	2.2	42	90	4	139	34	8	35	21	1.85
918588--919443	184	4.7	184	98	0	1613	35	14	15	34	1.88
922001--922063	23	2.7	23	90	0	90	36	6	19	38	1.77
922001--922073	23	3.2	23	86	3	85	35	5	19	39	1.75
922432--922494	23	2.7	23	90	0	90	36	6	19	38	1.77
922432--922504	23	3.2	23	86	3	85	35	5	19	39	1.75
924720--924788	33	2.1	33	94	0	120	50	4	10	34	1.56
932561--932587	14	1.9	14	100	0	54	37	7	40	14	1.74
938424--938457	2	17.5	2	93	6	61	50	0	0	50	1.00
951246--951301	24	2.3	24	93	6	96	26	3	41	28	1.72
955138--955168	16	1.9	16	100	0	62	25	25	16	32	1.96
974780--974843	28	2.3	28	94	5	112	18	6	20	54	1.65
974979--975039	31	2.0	30	87	6	86	40	16	14	27	1.88
976449--976505	24	2.4	24	90	0	87	28	22	19	29	1.98
977053--977090	20	1.9	20	88	0	58	21	26	10	42	1.85
982721--982801	36	2.2	37	80	8	94	37	23	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985716--985811	45	2.1	45	88	3	140	45	5	14	34	1.67
987665--987705	16	2.6	16	92	3	66	36	9	21	31	1.86
990291--990341	21	2.4	23	81	18	67	52	0	0	47	1.00
997274--997324	24	2.1	25	96	3	95	52	17	7	21	1.69
1004070--1004112	22	2.0	22	90	0	68	39	25	9	25	1.85
1023705--1023745	20	2.0	21	85	9	57	63	0	0	36	0.95
1023924--1023996	30	2.5	30	82	6	78	39	21	8	30	1.83
1024168--1024211	23	1.9	23	86	9	63	29	0	2	68	1.02
1025707--1025757	24	2.1	24	81	0	57	11	13	19	54	1.69
1026849--1026885	16	2.3	16	90	0	56	10	13	18	56	1.66
1040228--1040256	10	2.9	10	100	0	58	51	0	6	41	1.28
1040226--1040259	2	17.0	2	87	0	50	50	0	5	44	1.26
1040248--1040289	22	2.0	21	95	4	75	28	0	4	66	1.12
1040650--1040764	57	2.0	58	96	1	214	43	13	17	26	1.85
1040667--1040759	30	3.2	30	66	23	72	44	12	18	24	1.85
1043291--1043324	17	2.1	15	89	10	50	50	0	2	47	1.16

Tables:   1   2   3   4

The End!