genome.fa.s8817.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008817.1 Hibiscus syriacus cultivar Beakdansim tig00111983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1047399

Tables:   1   2   3   4   

This is table  3  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584866--585060	99	2.0	99	96	3	369	31	12	18	36	1.89
586225--586322	37	2.8	36	92	4	164	44	13	14	27	1.82
586790--586837	23	2.1	23	84	7	62	31	4	0	64	1.12
586933--587037	9	12.1	8	68	15	57	27	3	2	65	1.24
587223--587285	2	33.0	2	90	9	105	49	0	0	50	1.00
587307--587357	16	2.9	17	82	14	59	29	7	0	62	1.23
590358--590405	15	3.1	15	85	11	62	81	6	12	0	0.87
590364--590412	8	6.2	8	78	4	55	81	4	14	0	0.83
590381--590422	22	2.0	21	85	4	57	80	7	11	0	0.88
590381--590440	25	2.6	23	79	10	61	76	6	16	0	0.99
591085--591133	22	2.2	22	92	0	80	32	24	14	28	1.94
591543--591577	18	2.0	18	88	5	54	20	8	28	42	1.81
592051--592333	36	8.0	36	78	9	296	26	19	13	40	1.89
592052--592333	73	4.0	71	75	10	290	26	19	13	40	1.89
592044--592333	102	2.7	104	77	13	277	27	18	14	39	1.89
592077--592396	138	2.3	138	83	1	399	29	19	12	39	1.88
593353--594038	100	6.7	101	88	5	991	33	26	17	22	1.96
593353--594038	205	3.3	205	92	1	1124	33	26	17	22	1.96
594585--594686	34	2.9	36	91	5	172	44	13	14	27	1.83
599198--599572	184	2.0	188	96	3	704	38	12	9	39	1.75
607712--607750	18	2.1	19	85	9	53	64	0	0	35	0.94
613642--613675	6	5.7	6	100	0	68	17	14	52	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620073--620110	2	19.0	2	100	0	76	50	0	0	50	1.00
621405--621461	29	1.9	30	82	10	73	45	5	5	43	1.49
627811--627850	20	2.0	21	90	5	64	62	5	10	22	1.46
636814--637152	168	2.0	171	97	2	648	41	14	6	37	1.72
651478--651536	11	5.7	11	86	13	90	15	16	28	38	1.89
651478--651550	30	2.4	30	86	10	105	15	19	28	36	1.92
651478--651550	21	3.7	20	89	7	96	15	19	28	36	1.92
651535--651607	36	2.0	36	84	5	94	19	42	19	19	1.90
651559--651607	18	2.8	18	93	3	82	18	44	18	18	1.87
651585--651609	13	1.9	13	100	0	50	16	48	16	20	1.82
651628--651694	29	2.3	29	84	5	82	23	10	25	40	1.86
651657--651711	29	1.9	28	82	10	67	29	9	21	40	1.84
660913--660964	9	5.3	10	82	13	72	13	19	30	36	1.90
660981--661030	18	2.8	18	96	0	91	18	46	18	18	1.85
661008--661032	13	1.9	13	100	0	50	16	48	16	20	1.82
661051--661117	29	2.3	29	86	0	89	22	11	26	38	1.89
661833--661884	9	5.3	10	82	13	72	13	19	30	36	1.90
661901--661950	18	2.8	18	96	0	91	18	46	18	18	1.85
661928--661952	13	1.9	13	100	0	50	16	48	16	20	1.82
660209--662040	920	2.0	920	99	0	3628	24	23	22	29	1.99
661971--662037	29	2.3	29	84	0	80	23	8	26	40	1.84
662000--662054	29	1.9	28	82	10	67	30	7	21	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665405--665507	53	1.9	53	92	0	170	43	10	10	34	1.74
665846--665933	21	4.2	21	76	11	90	25	18	26	30	1.98
665895--665941	21	2.3	20	88	3	67	27	17	27	27	1.97
666082--666112	6	5.2	6	100	0	62	35	48	16	0	1.46
666597--666623	6	4.5	6	100	0	54	0	14	51	33	1.43
666723--666775	22	2.4	22	90	0	88	39	26	16	16	1.91
666764--666991	21	11.1	21	66	4	124	37	23	18	20	1.94
666764--666987	41	5.5	41	90	0	358	37	23	18	20	1.95
667835--667868	2	17.5	2	93	6	61	50	0	0	50	1.00
667838--667918	24	3.2	26	72	16	71	54	0	0	45	0.99
667880--667919	19	2.1	19	85	0	53	55	0	0	45	0.99
667924--667985	23	2.7	23	89	2	88	27	48	12	11	1.76
667922--667985	12	5.4	12	84	3	85	28	48	12	10	1.75
668498--668526	2	14.5	2	100	0	58	51	0	0	48	1.00
668941--668988	22	2.2	21	79	13	53	56	4	0	39	1.19
671721--671804	21	4.0	21	93	0	114	19	10	51	19	1.75
671730--671791	12	5.7	12	69	21	55	19	8	51	20	1.72
671742--671882	30	4.7	30	70	15	94	20	9	52	17	1.72
671783--671913	39	3.4	39	95	0	235	20	9	53	16	1.71
686167--686200	18	1.9	17	88	5	50	58	0	0	41	0.98
688691--688724	2	17.5	2	93	6	61	50	0	0	50	1.00
691497--691560	26	2.5	26	82	10	78	64	0	1	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691497--691611	30	3.6	30	74	19	81	60	4	2	32	1.30
699506--699855	174	2.0	175	99	0	693	33	22	12	31	1.91
700652--700683	10	3.2	10	90	0	55	25	9	9	56	1.61
700685--701308	60	10.2	60	73	16	442	41	1	11	45	1.49
700884--700953	25	3.1	22	79	16	63	38	0	11	50	1.39
700905--700952	14	3.6	14	81	16	66	35	0	16	47	1.47
701027--701109	21	4.1	21	64	14	57	44	0	10	44	1.39
700800--701249	102	4.3	107	72	15	332	41	2	11	45	1.51
701221--701308	21	3.7	22	70	19	70	42	0	9	48	1.34
701272--701303	14	2.2	15	94	5	57	40	0	6	53	1.26
701397--701536	60	2.3	60	93	1	246	44	0	11	43	1.45
701472--701583	46	2.4	49	86	11	180	43	0	10	45	1.38
701506--701684	60	3.1	59	83	11	212	41	0	10	47	1.38
701648--701689	18	2.3	18	91	0	66	47	0	4	47	1.23
703837--703867	15	2.1	14	94	5	53	54	6	0	38	1.26
704190--704230	22	1.9	22	90	5	66	53	21	0	24	1.46
704392--704459	26	2.6	26	95	2	118	7	39	5	47	1.56
713955--714029	33	2.3	33	90	0	114	26	26	37	9	1.87
714033--714090	29	2.0	29	96	0	107	18	31	36	13	1.90
714091--714181	33	2.8	32	83	6	112	9	36	27	26	1.88
719307--719375	31	2.2	31	94	0	129	59	0	7	33	1.25
719307--719355	15	3.3	14	73	15	53	59	0	8	32	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719317--719371	16	3.5	16	76	14	69	56	0	9	34	1.31
719454--719496	17	2.4	18	88	7	61	46	0	0	53	1.00
720068--720124	25	2.4	23	76	5	60	43	1	0	54	1.10
723529--723580	23	2.3	23	96	3	97	44	28	5	21	1.75
731934--732219	140	2.0	140	95	0	518	33	11	18	35	1.88
737280--737320	20	2.0	21	95	4	75	70	4	9	14	1.30
737472--737545	22	3.6	19	70	19	60	55	0	4	40	1.19
740708--740760	26	2.0	26	85	7	72	45	3	3	47	1.39
741841--741883	3	14.3	3	100	0	86	67	0	0	32	0.91
749278--749366	23	3.8	23	65	8	63	8	33	33	23	1.86
749410--749467	29	2.0	29	86	0	80	24	27	34	13	1.93
760625--760692	8	8.5	8	74	16	52	26	5	0	67	1.13
760625--760678	16	3.4	16	71	19	58	27	5	0	66	1.13
760621--760685	32	2.0	32	100	0	130	27	6	0	66	1.15
763294--763336	18	2.4	18	80	7	52	34	11	6	46	1.67
765485--765759	96	2.8	96	93	1	460	36	13	20	30	1.90
773167--773219	20	2.8	18	78	13	61	45	3	5	45	1.45
774956--775001	24	2.0	23	83	12	58	36	0	6	56	1.25
775503--775563	17	3.6	17	81	0	77	44	0	1	54	1.10
775513--775623	23	4.7	23	71	17	68	36	0	2	59	1.18
775573--775646	33	2.3	31	88	4	112	32	0	0	67	0.91
775656--775709	24	2.2	25	83	9	67	37	0	1	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775568--775709	29	5.5	25	71	16	92	35	0	1	63	1.03
777144--777183	21	2.0	20	85	5	53	30	5	12	52	1.60
777879--777926	2	24.0	2	100	0	96	50	0	0	50	1.00
779580--779964	183	2.1	182	90	4	609	46	7	3	42	1.47
783616--783669	27	2.0	27	96	0	99	37	11	9	42	1.73
787698--787745	23	2.1	23	84	0	60	37	12	16	33	1.86
788163--788235	23	3.2	23	90	0	110	38	20	5	35	1.76
788262--788748	229	2.1	229	92	1	807	39	7	7	45	1.60
788857--788892	17	2.1	17	89	0	54	33	22	13	30	1.93
799824--800171	167	2.1	169	97	2	659	36	11	12	39	1.80

Tables:   1   2   3   4