Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008822.1 Hibiscus syriacus cultivar Beakdansim tig00111990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  699754

Tables:   1   2   3   4   

This is table  4  of  4  ( 416 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587824--587861
19
2.0
19
100
0
76
31
0
15
52
1.43
587987--588023
2
18.5
2
89
10
58
48
0
2
48
1.15
591170--591265
47
2.0
47
100
0
192
16
27
14
41
1.87
593598--593672
3
26.3
3
89
10
122
65
0
0
34
0.93
593600--593668
25
2.8
25
95
0
129
66
0
0
33
0.92
593875--594382
45
11.4
45
91
1
727
34
18
24
22
1.96
593941--594014
25
3.2
25
63
21
70
35
16
25
22
1.95
595045--595123
22
3.6
22
87
0
122
41
12
11
34
1.79
595473--595628
54
3.0
51
81
9
190
26
23
14
35
1.94
596500--596646
76
1.9
76
84
2
197
31
22
14
31
1.94
596500--596676
76
2.3
77
81
1
196
32
22
13
31
1.92
596691--596929
109
2.2
109
82
6
297
30
22
16
30
1.96
600048--600080
16
2.1
16
94
0
57
0
21
0
78
0.75
600059--600101
9
4.7
9
85
5
59
0
9
2
88
0.60
600053--600088
8
4.6
8
89
3
56
0
11
0
88
0.50
600053--600103
16
3.2
16
86
5
59
0
9
1
88
0.60
607005--607043
17
2.4
17
91
4
62
51
2
0
46
1.14
607663--607730
31
2.2
31
92
5
111
22
29
14
33
1.94
609674--609735
31
2.0
31
93
0
106
35
16
27
20
1.94
614171--614251
35
2.3
35
82
4
90
43
24
1
30
1.62
614745--615030
145
2.0
143
87
7
418
48
8
6
35
1.61
614934--615284
174
2.0
175
98
1
679
41
14
10
33
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615378--615449
35
2.1
35
83
0
90
30
1
25
43
1.63
630567--630591
12
2.1
12
100
0
50
16
24
16
44
1.86
634216--634250
18
1.9
17
88
11
52
71
11
0
17
1.14
641016--641662
59
11.0
59
91
1
940
31
21
14
32
1.93
642186--642260
21
3.6
21
96
0
132
22
26
17
33
1.96
647194--647242
25
2.0
25
95
0
89
26
22
20
30
1.98
648100--648620
59
8.8
59
88
2
661
31
20
14
33
1.92
649131--649182
20
2.6
20
93
0
95
28
26
13
30
1.94
650767--650822
4
13.8
4
85
10
69
69
3
0
26
1.04
650841--651172
37
8.8
37
81
8
366
47
7
2
43
1.42
650873--650903
15
2.0
16
93
6
55
45
3
0
51
1.17
650852--651172
77
4.3
75
83
8
359
47
7
2
43
1.43
664396--664446
18
2.8
18
96
0
93
19
21
29
29
1.98
664480--664536
4
13.8
4
80
12
62
68
1
0
29
1.00
664480--664545
9
7.3
9
74
16
57
68
3
0
28
1.05
664480--664539
28
2.1
29
87
3
86
68
1
0
30
0.99
664482--664539
24
2.4
25
82
11
75
68
1
0
29
0.99
664480--664536
17
3.2
18
81
16
73
68
1
0
29
1.00
664552--664896
38
9.3
38
83
9
444
45
7
2
45
1.42
671356--671536
29
6.2
29
89
0
272
51
12
0
35
1.44
671356--671536
87
2.1
88
92
3
303
51
12
0
35
1.44
674378--674405
13
2.2
13
100
0
56
25
14
25
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
675217--675257
21
1.9
22
95
5
75
21
9
26
41
1.84
675805--675845
2
20.5
2
100
0
82
48
0
0
51
1.00
680858--681317
228
2.0
229
96
0
841
42
6
19
32
1.76
686800--687059
69
3.8
68
76
9
215
28
21
23
26
1.99
688088--688159
31
2.3
31
95
0
126
20
13
13
51
1.76
689712--689755
18
2.4
18
92
0
79
34
15
20
29
1.94
695672--695728
3
21.0
3
77
16
54
33
0
0
66
0.92
695673--695726
19
2.9
19
88
2
83
33
0
0
66
0.92
697333--697374
20
2.2
19
86
4
57
33
0
2
64
1.07
697431--697482
23
2.2
25
82
6
63
51
0
0
48
1.00
699546--699587
7
6.0
7
81
8
50
14
16
14
54
1.71
699546--699587
15
3.0
14
83
10
50
14
16
14
54
1.71

Tables:   1   2   3   4

The End!