genome.fa.s8823.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008823.1 Hibiscus syriacus cultivar Beakdansim tig00111993_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1111368

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085169--1085261	21	4.5	21	78	4	100	39	18	24	17	1.91
1085169--1085261	41	2.3	41	100	0	186	39	18	24	17	1.91
1085296--1085364	20	3.5	20	86	5	95	27	27	18	26	1.98
1085552--1085595	22	2.0	22	91	8	72	22	45	13	18	1.84
1085552--1085603	22	2.5	21	84	12	63	23	44	11	21	1.84
1085874--1085915	20	2.1	20	95	0	75	9	16	19	54	1.69
1087236--1087280	18	2.5	18	88	0	72	26	44	15	13	1.83
1087762--1087807	20	2.3	20	84	0	56	36	23	21	17	1.94
1087773--1087827	20	2.8	19	78	10	58	40	20	21	18	1.92
1087817--1087874	14	3.9	14	72	16	53	50	22	15	12	1.77
1087805--1087891	32	2.7	33	90	3	140	49	20	17	12	1.79
1087908--1087965	14	3.9	14	79	16	71	8	15	25	50	1.73
1087923--1088039	20	6.4	18	75	15	71	13	18	24	42	1.87
1087903--1087981	32	2.4	33	91	2	133	10	17	24	48	1.78
1087966--1088020	20	2.8	19	89	5	83	16	25	23	34	1.95
1089888--1089922	14	2.5	14	85	0	52	31	0	20	48	1.50
1090031--1090084	14	3.5	14	77	22	63	48	20	20	11	1.80
1090012--1090089	33	2.4	33	91	0	120	42	21	23	12	1.87
1090108--1090165	20	2.9	20	97	0	107	15	22	24	37	1.93
1091221--1091274	24	2.2	24	90	0	81	24	16	20	38	1.92
1091449--1091473	12	2.1	12	100	0	50	72	0	28	0	0.86
1093761--1093887	33	3.8	33	84	4	166	43	18	22	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093741--1093852	19	6.4	19	66	20	73	42	18	19	18	1.89
1093762--1093894	66	2.0	66	91	0	212	42	18	21	17	1.90
1094050--1094086	14	2.6	14	91	0	65	45	24	0	29	1.53
1095483--1095566	42	2.0	42	85	0	114	23	16	38	21	1.93
1097593--1097680	33	2.6	33	90	1	131	39	25	23	11	1.88
1097568--1097733	20	9.1	19	72	17	111	43	21	21	13	1.87
1097722--1097764	19	2.3	19	83	0	50	9	18	20	51	1.74
1097729--1097809	19	4.5	19	73	16	73	9	17	23	49	1.76
1098366--1098421	20	2.8	20	94	0	94	26	17	21	33	1.96
1098328--1098462	61	2.2	60	80	5	146	22	20	21	36	1.95
1099929--1099994	25	2.5	26	80	7	62	31	1	6	60	1.30
1103047--1103085	13	3.0	13	84	0	60	25	20	20	33	1.97
1106353--1106424	22	3.3	22	90	7	119	26	29	20	23	1.99
1106585--1106637	22	2.4	22	84	6	63	43	7	1	47	1.42
1110271--1110316	24	1.9	24	100	0	92	32	17	0	50	1.47
1110611--1110660	22	2.3	22	92	0	82	26	30	18	26	1.98

Tables:   1   2   3   4   5   6

The End!