genome.fa.s8845.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008845.1 Hibiscus syriacus cultivar Beakdansim tig00112052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591764

Tables:   1   2   3   

This is table  2  of  3  ( 264 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307765--307838	36	2.1	36	92	0	121	32	16	12	39	1.85
315823--315889	26	2.6	25	88	4	98	29	23	17	28	1.97
331068--331469	58	6.9	58	86	4	524	34	19	12	33	1.89
331065--331469	175	2.3	174	87	3	573	34	19	12	33	1.89
331068--331469	59	6.9	59	85	5	532	34	19	12	33	1.89
337959--338087	57	2.2	57	82	4	161	37	17	12	32	1.87
337994--338186	99	1.9	99	92	2	325	36	20	13	29	1.91
338087--338445	58	6.1	58	86	2	477	36	18	12	32	1.89
338087--338460	175	2.1	176	87	1	545	36	19	12	31	1.89
338087--338452	117	3.1	115	84	5	482	36	19	12	32	1.89
341158--341218	23	2.7	23	81	0	68	22	22	21	32	1.98
345297--345370	20	3.7	20	83	7	96	25	21	31	21	1.98
345297--345474	94	1.9	98	84	7	249	23	19	30	25	1.98
345391--345489	21	4.8	20	76	13	92	22	20	31	26	1.98
345391--345489	42	2.4	40	81	10	110	22	20	31	26	1.98
345782--346000	108	2.0	109	97	1	413	39	12	9	37	1.76
348906--348996	20	4.6	20	80	0	101	27	19	32	19	1.96
349061--349118	21	2.8	21	94	0	98	17	18	41	22	1.90
350016--350190	44	4.0	44	88	1	262	24	22	13	39	1.90
357251--357559	54	5.7	54	80	3	336	37	16	14	31	1.89
357251--357559	107	2.9	108	84	2	363	37	16	14	31	1.89
358640--358666	11	2.5	11	100	0	54	22	40	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364366--364624	54	4.8	53	85	7	326	36	17	11	33	1.86
364366--364624	108	2.4	108	88	2	369	36	17	11	33	1.86
365881--365980	44	2.3	44	92	0	164	29	18	12	41	1.86
365984--366021	19	2.0	19	85	10	51	34	28	5	31	1.80
368911--369008	32	3.1	32	95	0	178	25	23	14	36	1.93
372929--372957	12	2.3	13	94	5	51	24	31	6	37	1.82
374129--374393	44	6.0	44	83	6	331	25	21	12	40	1.88
377501--377549	21	2.3	21	85	0	62	20	14	2	63	1.40
377739--377773	13	2.7	13	100	0	70	25	20	14	40	1.90
382539--382569	15	2.1	15	93	0	53	22	6	22	48	1.73
384244--384382	40	3.4	41	88	4	192	39	15	17	27	1.90
384299--384362	20	3.2	20	69	8	58	48	10	15	25	1.77
389460--389533	36	2.1	36	94	0	130	31	16	13	39	1.87
390115--390149	2	17.0	2	94	5	61	48	0	2	48	1.16
397525--397574	25	2.0	26	92	4	84	28	24	18	30	1.97
407687--407742	8	6.5	8	74	22	51	80	12	7	0	0.90
407704--407742	15	2.6	15	91	0	60	82	12	5	0	0.83
413339--413744	58	7.0	57	82	8	451	34	18	12	34	1.88
413345--413745	175	2.3	174	85	5	533	35	18	11	34	1.88
413339--413744	59	7.0	59	84	6	506	34	18	12	34	1.88
420287--420796	58	8.7	59	87	3	640	36	18	11	33	1.87
420287--420799	117	4.4	118	86	3	637	36	18	11	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421125--421181	22	2.8	20	82	10	69	31	31	8	28	1.87
426220--426341	40	3.0	40	95	0	226	23	16	26	33	1.96
428173--428233	23	2.7	23	77	10	61	24	22	16	36	1.94
434230--434293	25	2.7	23	82	4	65	21	15	26	35	1.94
435695--435736	20	2.1	20	90	0	66	28	26	23	21	1.99
435705--435744	8	5.5	8	77	22	52	27	25	22	25	2.00
435705--435764	28	2.1	28	87	0	84	28	23	26	21	1.99
435733--435785	20	2.7	20	96	0	97	26	22	33	16	1.96
435806--435904	21	4.8	20	79	8	99	20	21	33	25	1.97
435806--435904	42	2.4	42	84	3	119	20	21	33	25	1.97
437262--437310	20	2.5	19	83	9	55	32	12	4	51	1.58
437546--437570	12	2.1	12	100	0	50	0	32	0	68	0.90
438173--438242	34	2.1	32	84	5	86	24	25	15	34	1.95
438608--438718	20	5.6	20	85	0	141	27	19	34	18	1.95
438608--438718	40	2.8	40	91	0	177	27	19	34	18	1.95
438742--438882	21	6.7	21	85	8	155	17	18	39	24	1.92
438742--438882	63	2.2	63	83	7	171	17	18	39	24	1.92
439783--439957	44	4.0	44	88	1	244	24	21	12	41	1.87
446599--446916	54	5.9	54	79	3	318	37	16	13	32	1.88
446608--446916	107	2.9	108	84	2	363	37	16	13	32	1.88
447919--447945	11	2.5	11	100	0	54	22	40	0	37	1.54
453057--453386	54	6.1	54	83	1	365	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454642--454854	44	4.8	44	81	6	270	25	23	12	38	1.89
454642--454854	88	2.4	88	87	1	311	25	23	12	38	1.89
457768--457856	32	2.8	32	98	0	169	26	22	15	34	1.94
463201--463465	44	6.0	44	87	3	363	24	22	12	39	1.89
471332--471418	15	5.9	15	69	20	51	6	17	2	73	1.15
471342--471441	5	18.4	5	70	19	51	5	18	3	74	1.13
471342--471394	22	2.4	23	90	9	92	3	18	3	73	1.14
471342--471410	22	3.2	22	82	11	65	5	18	2	72	1.18
471403--471444	17	2.3	19	76	20	52	2	19	2	76	1.01
471332--471435	26	4.2	26	69	24	73	5	17	2	74	1.14
472533--472563	6	5.2	6	92	0	53	29	35	19	16	1.93
476861--476910	21	2.6	19	82	17	59	84	2	8	6	0.86
476870--476910	11	3.5	12	81	15	50	87	0	7	4	0.65
476870--476910	12	3.5	12	84	15	50	87	0	7	4	0.65
483640--483710	20	3.5	20	73	5	72	42	14	21	22	1.88
483626--483724	41	2.4	41	88	1	137	37	17	19	26	1.93
490643--490789	76	2.0	72	80	14	165	46	6	8	38	1.60
496827--497468	317	2.0	319	96	3	1204	36	11	16	34	1.85
500804--501010	22	9.6	21	77	4	198	44	6	1	46	1.39
500804--501010	43	4.8	43	97	1	378	44	6	1	46	1.39
501988--502058	34	2.1	35	97	2	135	36	16	18	28	1.93
503800--503830	16	1.9	16	93	0	53	41	38	3	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505773--505864	46	2.0	45	87	2	130	31	22	6	39	1.80
508305--508354	26	1.9	26	100	0	100	56	10	16	18	1.67
508497--508568	29	2.4	31	75	13	78	43	8	15	33	1.76
508497--508571	31	2.5	30	77	12	75	42	8	16	33	1.77
513259--513358	35	2.7	35	86	6	119	38	15	16	31	1.89
513639--513700	23	2.8	22	75	20	58	20	6	4	67	1.32
513654--513699	24	2.0	23	83	12	58	19	6	4	69	1.28
513747--513831	37	2.3	37	86	7	129	28	2	1	68	1.09
513768--513883	44	2.6	45	77	11	116	18	6	1	74	1.11
513978--514007	15	2.0	15	100	0	60	20	20	0	60	1.37
516422--516460	8	5.0	8	84	6	53	10	17	12	58	1.61
517573--517641	24	3.0	24	74	8	70	76	8	14	0	1.00
517574--517631	24	2.5	24	81	13	77	82	6	10	0	0.83
517581--517628	16	2.9	16	80	20	55	79	8	12	0	0.94
518235--518285	22	2.3	22	93	6	86	35	25	13	25	1.93
519146--519722	102	5.6	102	96	0	1046	29	20	13	36	1.90
519332--519418	37	2.4	37	88	1	122	25	20	13	40	1.89
519434--519520	37	2.4	37	88	1	122	25	20	13	40	1.89
519550--519622	37	2.0	37	88	0	110	26	21	13	38	1.91
519795--519866	37	1.9	37	82	0	90	29	22	8	40	1.83
520327--521215	105	8.5	105	80	7	866	32	25	19	22	1.97
520551--521214	109	6.4	97	76	12	402	32	25	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520331--521214	424	2.1	413	81	6	1062	33	25	19	22	1.97
521676--521775	35	2.7	35	86	6	119	38	15	16	31	1.89
522039--522120	23	3.5	23	75	21	64	18	6	3	71	1.21
522188--522297	6	17.7	6	68	20	50	19	3	0	76	0.99
522175--522267	30	3.0	29	78	10	96	22	3	1	73	1.05
522192--522276	23	3.7	23	76	17	79	20	3	1	75	1.02
522157--522243	38	2.4	37	84	7	115	27	2	0	70	1.00
522165--522245	41	2.1	39	88	6	119	25	2	0	71	0.98
522142--522295	83	1.9	79	80	7	175	22	3	1	72	1.09
522189--522296	26	4.3	25	74	17	82	19	3	0	75	1.00

Tables:   1   2   3