Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008845.1 Hibiscus syriacus cultivar Beakdansim tig00112052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591764

Tables:   1   2   3   

This is table  3  of  3  ( 264 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522187--522296
49
2.3
47
83
10
134
19
3
0
76
0.99
522385--522414
15
2.0
15
100
0
60
20
20
0
60
1.37
527784--527846
32
2.0
32
84
9
85
53
7
7
30
1.58
538527--538571
13
3.5
13
84
3
56
35
35
2
26
1.69
538892--538935
20
2.2
20
88
4
63
79
4
13
2
0.98
544073--544117
13
3.5
13
84
3
56
35
35
2
26
1.69
547415--547459
19
2.4
19
80
0
54
8
8
0
82
0.85
554533--554582
19
2.6
19
77
0
55
54
6
18
22
1.65
558835--558882
22
2.2
22
88
7
71
18
52
20
8
1.71
558871--558912
22
1.9
22
95
0
75
21
42
14
21
1.88
558923--558997
29
2.6
29
87
6
116
33
4
17
45
1.67
559729--559771
15
2.9
14
83
16
52
25
13
13
46
1.81
565645--565725
9
9.9
8
75
25
64
38
0
0
61
0.96
565648--565712
3
21.7
3
90
0
103
38
0
0
61
0.96
566193--566231
11
3.7
10
86
6
51
82
2
15
0
0.79
566193--566231
5
7.4
5
83
11
51
82
2
15
0
0.79
566201--566239
15
2.6
15
91
0
60
79
0
20
0
0.73
571166--571197
15
2.1
15
94
0
55
25
18
9
46
1.79
578522--578566
13
3.4
14
77
20
51
82
0
17
0
0.68
579713--580018
83
3.7
83
91
0
504
26
14
21
37
1.92
582302--582594
45
6.5
45
85
1
381
31
24
9
35
1.87
589265--589595
45
7.4
45
81
3
382
29
25
10
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
589655--589709
17
3.2
17
72
23
51
54
12
5
27
1.60
591568--591670
45
2.3
44
89
1
152
29
27
8
34
1.87

Tables:   1   2   3

The End!