genome.fa.s885.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000885.1 Hibiscus syriacus cultivar Beakdansim tig00001728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1639497

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 787 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432790--1432825	19	1.9	18	88	5	54	36	19	19	25	1.95
1436891--1436932	22	1.9	22	100	0	84	42	16	0	40	1.48
1438239--1438283	20	2.3	19	84	3	54	42	22	0	35	1.54
1444457--1444565	30	3.7	29	81	4	110	30	22	13	33	1.93
1448143--1448181	18	2.2	18	85	0	51	10	28	7	53	1.62
1459154--1459509	83	4.2	83	82	5	383	29	19	16	33	1.94
1459216--1459509	42	7.0	42	66	16	124	30	19	16	33	1.94
1467905--1467980	21	3.6	21	85	0	98	40	18	36	3	1.69
1468358--1468501	38	3.5	43	80	12	149	31	20	15	31	1.94
1470748--1470817	32	2.2	31	82	2	86	30	15	14	40	1.87
1481203--1481248	17	2.7	17	96	0	83	26	28	17	28	1.98
1482123--1482174	19	2.9	18	83	8	61	5	25	3	65	1.32
1483223--1483252	14	2.1	15	93	6	53	43	0	0	56	0.99
1483315--1483353	17	2.2	17	90	4	60	64	2	0	33	1.08
1483352--1483403	3	18.7	3	78	21	60	36	0	0	63	0.95
1483352--1483401	13	3.8	13	82	17	68	36	0	0	64	0.94
1488436--1488563	59	2.2	59	86	0	175	27	17	25	29	1.98
1488680--1488806	45	2.8	45	96	1	229	38	7	23	30	1.82
1495042--1495108	34	1.9	34	82	14	84	20	13	19	46	1.83
1496127--1496194	33	2.1	33	97	0	127	32	14	27	25	1.95
1514126--1514166	3	13.3	3	94	5	73	68	0	0	31	0.90
1516205--1516276	32	2.2	32	92	0	117	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517338--1517402	12	5.5	11	79	20	53	1	16	1	80	0.88
1517313--1517410	18	5.4	18	75	11	85	3	18	1	77	0.95
1517313--1517408	42	2.3	42	79	15	110	3	18	1	77	0.97
1517588--1517619	2	16.0	2	93	0	55	50	3	0	46	1.17
1520430--1520468	9	4.2	9	87	6	51	82	2	0	15	0.79
1520433--1520509	14	5.2	14	72	18	50	74	1	5	19	1.08
1521481--1521509	15	1.9	15	100	0	58	17	6	27	48	1.72
1522625--1522715	17	5.4	17	70	19	75	19	0	48	31	1.50
1526298--1526377	32	2.5	32	87	0	106	36	12	16	35	1.86
1526299--1526386	32	2.8	32	85	0	104	36	11	18	34	1.86
1526582--1527089	250	2.0	250	99	0	1009	26	14	20	38	1.91
1536321--1536383	20	3.1	20	88	4	99	12	28	39	19	1.88
1548981--1549026	23	2.0	22	87	4	65	34	10	10	43	1.75
1559165--1559418	138	1.8	138	86	1	366	41	15	12	30	1.85
1562517--1562604	28	3.1	28	79	6	115	30	18	7	43	1.78
1562522--1562631	56	2.0	55	82	7	132	33	17	8	40	1.79
1562823--1562969	21	7.0	21	80	0	159	28	25	20	25	1.99
1562789--1562934	42	3.5	42	78	1	132	29	21	20	28	1.98
1562823--1562969	63	2.3	63	83	0	177	28	25	20	25	1.99
1563102--1563204	33	3.1	33	86	5	145	27	13	14	44	1.83
1564493--1564554	29	2.1	31	84	6	83	35	16	6	41	1.74
1567297--1567358	30	2.1	30	90	6	99	35	6	20	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1569084--1569144	19	3.3	18	79	6	68	40	11	16	31	1.84
1569767--1569794	3	9.3	3	100	0	56	32	0	0	67	0.91
1571056--1571164	54	2.0	54	92	1	184	32	8	0	58	1.34
1584942--1588396	134	25.9	133	84	4	4074	29	27	18	24	1.98
1584941--1588396	669	5.2	668	88	2	4616	29	27	18	24	1.98
1589368--1589543	90	2.0	90	94	0	307	45	6	9	38	1.64
1589860--1590223	133	2.7	131	81	7	364	29	28	15	26	1.96
1591496--1591554	30	2.0	30	90	3	93	35	6	15	42	1.73
1591634--1591731	21	4.7	21	78	10	103	21	31	21	25	1.98
1591675--1591732	22	2.8	20	80	12	64	24	31	20	24	1.98
1591757--1591828	20	3.5	20	73	3	63	23	30	18	27	1.97
1591831--1591865	10	3.6	10	92	3	54	25	25	34	14	1.94
1592203--1592272	34	2.1	32	86	5	95	31	15	30	22	1.95
1593268--1593292	9	2.8	9	100	0	50	76	0	24	0	0.80
1595055--1595123	29	2.2	30	82	15	86	36	5	17	40	1.74
1595064--1595123	29	2.0	30	90	6	95	35	6	16	41	1.75
1595203--1595300	21	4.7	20	82	10	117	21	33	21	23	1.97
1595323--1595402	41	2.0	41	87	0	115	22	30	21	26	1.99
1595323--1595397	20	3.7	20	78	3	78	21	30	20	28	1.98
1595748--1595817	34	2.1	32	89	5	104	31	14	30	24	1.94
1606245--1606335	41	2.2	41	100	0	182	50	0	12	37	1.40
1619763--1619823	23	2.7	22	84	2	86	19	26	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623872--1623990	48	2.6	44	79	8	139	41	7	21	30	1.80

Tables:   1   2   3   4   5   6   7

The End!