genome.fa.s8855.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008855.1 Hibiscus syriacus cultivar Beakdansim tig00112072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1316246

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 571 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230069--230128	23	2.6	23	76	10	68	18	10	0	71	1.13
236941--237060	36	3.3	36	70	9	118	26	18	13	41	1.87
236901--237113	72	2.9	72	80	6	180	27	18	14	39	1.89
237181--237379	102	2.0	102	94	0	353	32	18	12	37	1.88
237239--237311	37	1.9	38	86	2	103	27	20	13	38	1.90
237266--237432	65	2.6	65	78	6	178	30	19	11	38	1.87
237326--237611	102	2.8	101	78	4	299	30	17	12	39	1.87
237493--237576	36	2.3	36	81	0	87	28	19	13	39	1.89
237562--237620	30	2.0	30	83	12	77	38	15	11	33	1.84
237750--237829	36	2.3	36	82	6	103	43	16	10	30	1.80
237837--237994	84	1.9	85	83	1	210	31	23	20	25	1.98
238915--238997	25	3.3	24	78	11	69	26	4	2	66	1.24
238938--239001	28	2.4	25	78	16	67	29	1	1	67	1.09
238972--239090	43	2.9	39	79	17	120	31	2	1	64	1.16
238951--239094	37	3.7	38	72	18	127	30	2	2	65	1.16
238941--239101	45	3.6	43	71	20	125	29	2	1	66	1.15
239039--239158	9	12.9	9	70	19	52	19	4	1	75	1.06
239037--239126	17	5.4	16	69	21	51	22	1	2	74	0.99
239071--239201	38	3.5	36	71	19	90	16	9	0	73	1.13
238972--239154	47	4.0	45	78	14	146	25	3	1	69	1.14
239071--239159	15	5.9	15	75	16	67	15	5	1	77	1.01
239091--239182	13	6.1	15	72	19	52	16	8	1	73	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241300--242493	133	9.0	133	85	3	1444	31	16	22	29	1.96
246638--246807	90	1.9	88	92	2	286	44	7	11	37	1.69
254752--255056	130	2.3	130	87	0	421	42	15	8	33	1.78
257467--257510	20	2.1	21	91	4	72	38	22	13	25	1.91
257984--258126	55	2.6	55	95	0	250	30	24	18	27	1.98
262925--262977	21	2.5	21	75	6	54	32	28	16	22	1.96
263700--263843	54	2.6	55	83	2	200	29	23	18	28	1.98
264077--264129	23	2.3	23	100	0	106	39	28	3	28	1.74
264949--264999	3	17.3	3	80	11	61	64	0	1	33	1.05
264946--264971	12	2.2	12	100	0	52	57	0	0	42	0.98
265137--266315	134	8.8	133	84	2	1326	30	16	22	30	1.95
267961--268001	2	21.0	2	95	5	75	48	0	0	51	1.00
272695--273042	129	2.7	131	84	4	445	41	15	9	32	1.80
275139--275187	3	16.7	3	78	4	55	63	2	2	32	1.17
275687--275733	8	5.6	8	76	18	51	65	0	0	34	0.93
275680--275742	33	1.9	33	87	6	92	66	1	0	31	1.01
275698--275754	24	2.4	23	78	18	64	64	3	0	31	1.10
275674--275972	149	2.0	150	99	0	591	48	7	13	30	1.69
275836--275882	8	5.6	8	76	18	51	65	0	0	34	0.93
275829--275891	33	1.9	33	87	6	92	66	1	0	31	1.01
275847--275903	24	2.4	23	78	18	64	64	3	0	31	1.10
280127--280195	28	2.5	28	97	2	131	20	8	20	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288159--288196	17	2.0	20	85	14	55	65	2	0	31	1.06
291902--291934	6	5.5	6	100	0	66	63	0	0	36	0.95
293100--293151	2	26.0	2	100	0	104	50	0	0	50	1.00
295546--295600	27	2.0	27	82	0	65	60	14	9	16	1.59
295910--295948	17	2.3	17	86	8	53	74	5	0	20	1.01
306353--306384	11	2.9	11	100	0	64	28	0	9	62	1.26
319320--319747	82	5.2	83	78	5	359	35	17	17	28	1.93
319313--319747	42	10.5	42	78	4	391	35	17	18	29	1.93
319313--319748	124	3.5	125	75	6	422	35	16	18	29	1.93
331212--331262	20	2.6	19	81	12	59	15	9	0	74	1.06
338914--338961	2	24.0	2	83	8	62	45	2	4	47	1.33
351846--351900	3	18.7	3	96	3	103	34	0	0	65	0.93
354030--354059	2	15.0	2	100	0	60	50	0	0	50	1.00
355491--355527	18	2.1	18	94	0	65	18	43	21	16	1.88
357993--358080	24	3.7	24	87	0	113	25	18	19	37	1.94
358016--358090	24	3.1	23	76	12	71	25	13	18	42	1.87
358287--358317	2	15.5	2	100	0	62	48	0	0	51	1.00
360214--360250	18	2.1	17	95	5	65	18	48	21	10	1.78
362701--362836	24	5.7	24	90	0	191	23	18	22	36	1.95
362723--362835	12	9.3	13	68	14	89	23	16	23	36	1.94
366543--366592	23	2.1	24	92	3	84	36	8	30	26	1.85
366739--366806	18	3.6	18	68	14	55	47	2	0	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366759--366831	16	4.1	16	72	24	56	50	4	0	45	1.20
366725--366854	40	3.2	40	90	5	192	46	4	0	48	1.22
366771--366877	22	5.0	22	70	15	89	44	4	0	50	1.22
367242--367297	27	2.0	30	89	10	91	32	0	5	62	1.18
367939--367988	24	2.0	25	88	3	75	56	2	4	38	1.30
367998--368040	16	2.8	15	86	6	59	65	4	0	30	1.13
374277--374336	28	2.1	28	93	0	102	30	33	11	25	1.91
377831--377898	30	2.3	30	94	0	118	36	29	5	27	1.80
377376--378833	472	3.1	471	91	2	2258	35	16	8	39	1.80
378298--378371	30	2.5	30	93	0	130	36	29	5	28	1.79
378770--378883	30	3.9	29	80	11	117	41	23	3	31	1.71
378804--378859	26	2.2	26	100	0	112	42	19	3	33	1.69
378783--378869	26	3.2	26	82	12	95	42	22	2	32	1.66
379077--379108	13	2.4	14	89	10	57	0	34	0	65	0.93
385405--385429	13	1.9	13	100	0	50	60	0	0	40	0.97
386601--386659	22	2.5	24	72	16	59	42	0	3	54	1.17
388982--389044	23	2.7	23	97	0	117	20	25	22	31	1.98
391983--392020	16	2.4	16	100	0	76	36	26	5	31	1.79
392737--392782	21	2.2	21	84	0	56	28	23	17	30	1.97
395224--395267	19	2.3	19	100	0	88	25	29	18	27	1.98
402580--402709	46	2.8	46	98	0	251	45	16	5	33	1.70
407253--407303	20	2.5	20	93	0	84	29	19	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412542--412599	25	2.3	25	84	3	71	24	6	37	31	1.82
415949--415989	21	2.0	21	90	0	64	48	14	2	34	1.57
419587--419612	2	13.0	2	100	0	52	50	0	0	50	1.00
420911--420963	17	3.1	17	83	0	70	41	7	15	35	1.75
422797--422866	33	2.1	33	86	5	97	22	31	15	30	1.95
423109--423149	21	2.0	21	90	0	64	21	24	24	29	1.99
423192--423260	36	1.9	36	91	5	113	28	15	28	26	1.96
423192--423243	16	2.9	17	72	27	54	30	17	26	25	1.97
423576--423633	18	3.0	19	82	12	82	48	12	12	27	1.76
426646--426685	21	1.9	21	89	0	62	22	22	22	32	1.98
427022--427078	21	3.0	18	83	14	78	29	12	8	49	1.70
427335--427392	21	2.8	21	94	5	100	25	29	18	25	1.98
427836--427902	33	2.0	33	85	0	89	31	16	28	23	1.96
430514--430566	17	3.1	17	88	0	79	41	5	15	37	1.70
430517--430585	17	3.9	18	84	5	63	42	8	11	37	1.72
431338--431369	16	1.9	17	93	6	57	40	15	12	31	1.85
431708--432088	186	2.0	186	90	2	613	45	9	3	40	1.55
445709--446491	390	2.0	390	92	1	1311	30	19	20	29	1.97
449713--449767	26	2.1	26	100	0	110	30	16	20	32	1.94
449761--449825	13	5.0	13	75	20	55	30	18	15	35	1.92
449761--449825	26	2.5	26	79	0	76	30	18	15	35	1.92
450766--450858	46	2.0	45	81	6	107	47	4	0	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456801--456828	2	14.0	2	100	0	56	50	0	0	50	1.00
458835--458885	17	3.1	16	74	17	50	62	3	5	27	1.36
460176--460218	21	2.0	21	82	8	52	62	6	9	20	1.48
466023--466062	20	2.1	19	85	4	53	30	17	10	42	1.82
469277--469344	25	2.8	25	93	2	111	30	16	42	10	1.81
469519--469568	24	2.1	24	85	7	66	26	2	12	60	1.43
470043--470075	16	2.1	16	88	11	50	15	9	0	75	1.03
475051--475121	21	3.0	25	71	23	71	12	18	0	69	1.20
475051--475141	47	2.0	46	82	6	112	13	19	0	67	1.23
475688--475729	20	2.1	20	100	0	84	26	28	26	19	1.98

Tables:   1   2   3   4   5