genome.fa.s8857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008857.1 Hibiscus syriacus cultivar Beakdansim tig00112079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530231

Tables:   1   2   3   

This is table  1  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2495--2585	20	4.9	20	68	20	72	34	5	15	45	1.69
2494--2641	53	2.8	52	94	3	262	33	6	12	47	1.66
2600--2639	20	2.0	20	90	0	62	37	7	10	45	1.66
6363--6616	117	2.2	117	86	0	382	32	19	31	15	1.93
6363--6677	117	2.7	116	83	3	330	33	19	32	15	1.93
7284--7318	15	2.3	15	95	0	61	20	11	31	37	1.88
12541--12631	20	4.9	20	68	20	72	34	5	15	45	1.69
12540--12687	53	2.8	52	94	3	262	33	6	12	47	1.66
12646--12685	20	2.0	20	90	0	62	37	7	10	45	1.66
17160--17232	36	2.1	35	84	5	94	47	4	0	47	1.21
20646--20710	3	21.7	3	84	6	87	38	0	0	61	0.96
21435--21492	18	3.1	20	76	16	70	70	0	5	24	1.07
21438--21510	37	2.0	37	83	5	94	65	0	10	23	1.24
22855--22909	26	2.1	26	89	0	83	43	30	16	9	1.79
27540--27871	113	2.9	114	93	0	549	33	15	20	30	1.93
30366--30420	22	2.5	22	93	0	101	34	10	14	40	1.81
30910--31238	170	2.0	167	90	4	520	35	13	12	38	1.83
31115--31481	181	2.0	183	93	3	623	30	14	15	39	1.88
31422--32362	76	12.4	76	97	0	1740	22	19	23	34	1.96
32520--32597	3	25.7	3	79	7	86	41	0	0	58	0.98
32524--32595	13	5.8	13	79	17	82	43	0	0	56	0.99
32602--32653	26	2.0	26	88	0	77	46	25	17	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36291--36336	19	2.3	20	92	3	76	54	4	6	34	1.46
37018--37075	27	2.1	27	83	0	71	12	10	17	60	1.58
43355--43397	19	2.2	20	91	4	70	51	4	6	37	1.50
45513--45542	7	4.1	7	95	4	51	56	0	3	40	1.16
45505--45542	14	2.7	15	84	15	55	52	0	5	42	1.24
46523--46567	23	2.0	23	86	4	65	51	20	4	24	1.66
46953--47133	60	3.0	59	77	11	181	32	20	3	42	1.71
51596--51926	167	2.0	167	97	0	626	33	7	22	36	1.83
52472--52514	21	2.0	21	86	0	59	32	25	23	18	1.97
52542--52579	20	1.9	20	88	0	58	23	34	31	10	1.89
53060--53277	103	2.1	103	92	0	364	24	13	25	37	1.92
53294--53361	23	3.0	23	84	0	82	25	23	25	26	2.00
56979--57080	30	3.4	30	89	4	145	31	26	20	21	1.98
57062--57190	59	2.1	62	81	8	158	34	20	17	26	1.95
57095--57189	32	3.1	32	77	15	110	35	18	16	28	1.93
58468--58512	21	2.1	21	87	0	63	15	24	28	31	1.96
61552--61885	166	2.0	167	97	0	625	32	7	22	37	1.81
62431--62473	21	2.0	21	90	0	68	32	27	23	16	1.96
63020--63237	103	2.1	103	96	0	400	24	12	25	37	1.91
63254--63321	23	3.0	22	80	4	73	23	23	26	26	2.00
73925--74797	435	2.0	435	97	1	1644	37	15	9	36	1.81
81746--81806	23	2.7	23	84	0	95	27	26	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83238--83275	20	1.9	20	88	0	58	26	18	18	36	1.94
87952--88137	93	2.0	93	98	1	365	30	15	18	36	1.92
89816--89857	18	2.3	18	87	0	57	26	19	26	28	1.98
89597--90188	296	2.0	296	100	0	1184	33	12	21	32	1.91
90112--90153	18	2.3	18	87	0	57	26	19	26	28	1.98
93390--93442	21	2.5	22	84	12	74	26	15	28	30	1.96
94318--94363	19	2.4	19	96	0	83	32	0	23	43	1.54
94445--94479	18	1.9	18	94	0	61	17	20	34	28	1.95
98440--98469	7	4.3	7	91	0	51	46	10	13	30	1.75
98566--98721	35	4.4	34	81	7	163	44	12	10	31	1.77
98566--98721	18	8.9	17	73	11	127	44	12	10	31	1.77
98564--98723	70	2.3	70	80	7	191	44	13	11	30	1.79
111992--112038	24	2.0	24	91	0	76	40	12	29	17	1.86
126171--126195	6	4.2	6	100	0	50	0	16	48	36	1.46
126481--126522	22	1.9	22	85	0	57	30	9	21	38	1.85
131794--131984	26	7.3	26	97	0	355	35	11	37	15	1.83
133923--134017	23	4.1	23	77	9	86	52	14	5	27	1.63
133923--134017	46	2.0	47	82	9	115	52	14	5	27	1.63
138598--138647	25	2.0	25	88	4	73	50	18	2	30	1.58
140326--140368	20	2.2	20	86	0	59	30	13	20	34	1.92
148053--148087	13	2.7	13	86	0	52	11	25	0	62	1.28
150690--150732	20	2.2	20	86	0	59	30	13	20	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155120--155174	24	2.3	24	87	3	85	30	25	21	21	1.98
157498--157857	179	2.0	177	95	4	654	30	16	12	40	1.85
164914--164991	32	2.5	31	85	4	111	24	15	15	44	1.85
164965--165031	22	3.2	21	69	16	59	28	16	11	43	1.83
165710--165766	11	5.2	11	72	8	53	36	5	0	57	1.21
166448--166489	21	1.9	23	81	18	54	40	2	0	57	1.12
167196--167342	40	3.7	39	75	8	109	29	25	12	31	1.93
167091--167292	20	10.0	21	73	12	111	31	25	12	30	1.92
167176--167342	20	8.4	20	78	11	92	29	25	12	32	1.92
167196--167383	80	2.3	80	81	5	202	29	24	13	32	1.93
167255--167382	40	3.2	39	75	14	127	25	24	14	35	1.93
167233--167383	20	7.6	20	75	10	87	29	23	13	33	1.93
167255--167406	80	1.9	78	80	7	173	26	23	13	36	1.91
167540--167576	15	2.6	14	87	8	56	29	2	0	67	1.04
168169--168202	12	2.8	12	90	0	50	55	29	0	14	1.40
168330--168383	24	2.2	24	90	0	81	22	18	18	40	1.91
170619--170654	18	2.0	18	88	0	54	52	25	2	19	1.59
170866--170926	29	2.1	29	90	0	95	24	16	26	32	1.96
170910--170940	14	2.2	14	94	0	53	6	16	35	41	1.74
172387--172483	21	4.6	21	83	3	106	25	20	31	21	1.98
172628--172665	4	9.5	4	88	0	58	71	2	0	26	1.00
173025--173123	42	2.4	42	87	0	144	17	18	36	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174593--174650	20	2.9	19	80	7	71	50	22	13	13	1.77
174649--174688	20	2.0	20	90	0	62	17	17	17	47	1.83
174652--174695	20	2.2	20	83	0	52	18	15	18	47	1.83
175017--175067	22	2.3	22	86	0	66	21	21	41	15	1.90
175210--175256	18	2.5	20	89	10	80	17	12	25	44	1.84
177325--177783	228	2.0	228	97	2	877	36	16	20	26	1.94
180774--180994	112	2.0	108	94	3	388	22	32	6	39	1.79
182524--182560	19	1.9	19	94	0	65	32	29	16	21	1.95
182586--182693	20	5.3	20	72	14	78	30	25	20	24	1.98
183510--183563	24	2.2	24	93	0	90	20	18	20	40	1.91
185886--186164	140	2.0	140	95	1	506	28	12	15	43	1.83
186150--186283	54	2.5	54	93	0	223	34	22	19	23	1.97
186182--186367	94	2.0	93	85	3	248	33	20	19	26	1.97
186181--186301	20	6.3	20	79	11	137	32	21	19	26	1.97
186181--186323	40	3.7	40	75	11	109	32	20	19	27	1.97
186373--186419	20	2.3	20	82	7	60	12	14	29	42	1.83
186523--186577	29	1.9	28	85	3	74	47	18	0	34	1.49
186518--186579	14	4.3	14	79	6	70	46	16	0	37	1.47
187965--188056	21	4.4	21	69	4	60	23	17	34	23	1.96
187965--188056	42	2.2	42	84	7	116	23	17	34	23	1.96
188563--188605	19	2.2	20	91	4	70	48	23	13	13	1.79
188645--188688	19	2.3	19	88	0	61	47	22	15	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188755--188823	20	3.5	20	82	7	86	18	20	24	36	1.95
190738--190863	20	6.7	20	78	10	122	42	24	17	15	1.87
191477--191513	19	1.9	19	88	0	56	21	13	29	35	1.92
192927--192979	27	2.0	27	85	7	74	32	1	0	66	1.03
192919--192963	20	2.1	23	84	12	60	33	2	2	62	1.20
194369--194413	21	2.1	21	100	0	90	53	0	17	28	1.44
195078--195126	23	2.2	21	78	7	53	10	12	20	57	1.64
196099--196128	2	15.0	2	100	0	60	50	0	0	50	1.00
197895--197962	27	2.5	26	88	6	109	44	0	0	55	0.99
198206--198250	22	2.0	23	83	12	58	35	2	4	57	1.31

Tables:   1   2   3