genome.fa.s8857.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008857.1 Hibiscus syriacus cultivar Beakdansim tig00112079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530231

Tables:   1   2   3   

This is table  3  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342676--342707	16	2.0	16	93	0	55	34	6	21	37	1.79
349568--349631	33	1.9	33	93	0	110	45	18	17	18	1.86
349972--350015	22	2.0	21	86	8	61	47	15	4	31	1.66
353858--353955	49	2.0	50	82	11	121	31	20	19	28	1.97
357521--357607	35	2.5	34	76	12	88	54	10	9	26	1.64
359906--359944	18	2.2	18	95	4	71	64	2	0	33	1.08
359998--360032	10	3.5	10	88	0	52	37	0	25	37	1.57
360685--360736	21	2.5	21	83	0	68	19	26	19	34	1.95
360727--360792	20	3.3	20	85	4	71	37	22	16	22	1.93
360743--360802	20	3.0	20	73	22	54	36	20	18	25	1.94
361647--361700	24	2.2	24	90	0	81	22	18	18	40	1.91
364179--364284	19	5.8	19	73	16	107	47	19	19	13	1.82
365830--365926	42	2.3	42	82	3	106	20	19	37	22	1.95
366430--366513	33	2.5	33	82	1	105	47	22	19	10	1.80
366500--366548	20	2.5	20	86	0	71	34	24	20	20	1.96
366572--366693	34	3.4	34	79	12	145	17	20	21	40	1.91
366593--366716	20	6.5	20	81	10	152	20	19	21	38	1.93
366555--366716	74	2.2	74	87	1	236	19	19	20	40	1.92
368613--368667	20	2.8	20	91	0	83	49	23	16	10	1.77
368615--368684	20	3.5	20	88	0	77	41	24	17	17	1.89
369286--369379	20	4.7	20	82	2	125	22	21	20	36	1.95
369288--369379	41	2.3	40	90	1	139	20	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369377--369416	21	1.9	21	89	0	62	40	20	22	17	1.92
373979--374006	14	2.0	14	100	0	56	21	7	35	35	1.81
375214--375259	16	2.8	16	83	6	56	39	19	15	26	1.91
386483--386629	63	2.3	63	87	1	206	10	44	8	35	1.71
387174--387223	25	2.0	25	84	3	66	42	10	0	48	1.37
387513--387583	20	3.5	20	81	7	81	30	22	21	25	1.98
388391--388444	24	2.2	24	93	0	90	20	18	20	40	1.91
390691--390720	12	2.5	12	94	0	51	53	30	0	16	1.44
390780--391045	140	1.9	140	96	0	496	28	13	15	42	1.84
391020--391357	20	17.7	20	77	10	323	31	21	19	26	1.97
391350--391388	20	2.0	20	100	0	78	10	20	20	48	1.78
391346--391403	20	2.9	20	86	0	71	13	17	24	44	1.85
392979--393071	42	2.2	42	80	3	107	22	17	39	20	1.92
393549--393593	20	2.4	19	88	7	65	40	26	17	15	1.90
393560--393598	20	2.0	20	94	0	69	38	23	20	17	1.93
393624--393691	20	3.4	20	91	0	100	17	17	26	38	1.92
395432--395495	20	3.2	20	84	2	85	46	25	15	12	1.81
395881--395923	22	2.0	22	100	0	86	18	13	41	25	1.88
396098--396191	20	4.7	20	83	0	116	23	22	26	27	1.99
398022--398092	4	17.2	4	73	23	51	21	5	0	73	1.04
398022--398110	25	3.4	25	89	9	117	20	7	0	71	1.10
398210--398246	15	2.4	16	86	13	51	16	2	2	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398265--398366	48	2.2	46	79	13	109	19	6	3	69	1.27
398391--398459	15	4.6	14	74	22	52	15	7	1	75	1.09
399013--399066	28	1.9	28	81	7	65	42	11	18	27	1.84
399226--399264	17	2.3	17	86	8	53	41	2	0	56	1.13
402367--402411	23	2.0	23	81	0	54	28	26	24	20	1.99
404220--404264	21	2.1	21	87	0	63	15	24	28	31	1.96
407543--407587	23	2.0	23	81	0	54	28	26	24	20	1.99
409394--409438	21	2.1	21	83	0	54	17	24	28	28	1.97
429337--429375	20	1.9	20	89	5	60	15	28	25	30	1.96
431967--432037	30	2.4	30	95	0	133	15	26	14	43	1.85
432068--432115	24	2.0	24	100	0	96	25	16	8	50	1.73
435635--435700	27	2.3	29	80	15	75	45	3	0	51	1.16
448877--448947	35	2.0	35	97	0	133	36	12	38	12	1.82
452055--452114	16	3.8	16	90	0	93	61	23	6	8	1.48
452073--452123	26	2.0	26	84	7	68	60	19	9	9	1.55
452327--452372	11	4.1	11	83	5	65	26	28	19	26	1.99
453240--453272	14	2.4	14	89	0	57	54	27	12	6	1.60
458303--458360	25	2.3	25	100	0	116	18	15	25	39	1.91
470041--470077	2	18.5	2	100	0	74	51	0	0	48	1.00
470154--470410	36	6.7	36	77	15	237	47	4	3	43	1.42
470192--470402	38	5.1	45	73	23	164	47	3	4	44	1.40
470127--470402	121	2.3	121	90	3	430	47	4	3	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470266--470295	2	15.5	2	93	6	53	50	0	0	50	1.00
474139--474220	38	2.1	40	90	6	132	48	8	4	37	1.55
476213--476263	24	2.2	24	82	3	59	47	7	3	41	1.51
476224--476282	24	2.5	24	81	8	68	55	3	6	33	1.43
476758--476803	16	2.9	16	86	0	65	21	21	10	45	1.82
477032--477096	23	2.8	23	100	0	130	44	0	4	50	1.22
477032--477094	14	5.2	14	66	33	56	42	0	4	52	1.22
477255--477306	7	7.8	6	76	19	50	19	0	32	48	1.49
477255--477306	13	3.9	12	78	14	50	19	0	32	48	1.49
477255--477303	20	2.4	20	86	10	64	20	0	34	44	1.52
477379--477415	15	2.4	15	95	4	65	40	2	5	51	1.39
478019--478067	25	1.9	26	87	4	73	38	6	8	46	1.58
478509--478703	2	101.0	2	73	16	153	45	4	2	47	1.35
478911--478935	12	2.1	12	100	0	50	24	32	0	44	1.54
479095--479218	15	9.1	14	73	20	88	42	4	5	47	1.45
479104--479140	13	3.0	13	92	7	60	37	5	8	48	1.56
479107--479218	11	8.6	12	73	19	59	43	3	5	47	1.43
479095--479218	26	4.6	27	71	20	82	42	4	5	47	1.45
479169--479216	16	2.6	19	71	21	57	45	0	4	50	1.21
479150--479235	28	3.1	28	76	15	81	44	2	4	48	1.36
484217--484312	31	3.1	31	95	0	165	31	11	15	41	1.83
485539--485571	17	1.9	17	88	11	50	12	30	12	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487745--487772	2	14.0	2	100	0	56	50	0	0	50	1.00
490924--490996	32	2.3	32	85	4	94	41	10	15	32	1.82
494569--494616	20	2.4	20	80	13	62	41	6	12	39	1.68
494572--494632	20	3.0	20	80	9	61	40	6	11	40	1.67
494691--494745	20	2.7	21	80	5	67	40	9	12	38	1.75
499942--499994	24	2.2	24	89	0	79	18	18	39	22	1.92
501204--501248	20	2.2	20	84	4	54	64	2	22	11	1.36
509537--509575	18	2.1	19	85	4	53	20	7	5	66	1.36
514391--514620	64	3.6	63	80	5	219	27	16	25	30	1.97
514519--514569	19	2.7	19	85	8	70	25	15	35	23	1.94
514412--514571	65	2.5	65	86	3	216	28	15	26	30	1.96
514413--514620	65	3.2	63	79	14	210	27	16	25	30	1.96
514789--514828	20	2.0	21	85	14	57	45	7	5	42	1.54
522981--523161	64	2.8	65	82	5	172	28	17	25	29	1.97
523109--523159	19	2.7	19	80	19	63	27	15	33	23	1.95
523002--523161	65	2.5	65	85	5	209	28	16	25	30	1.97
523378--523417	20	2.0	21	85	14	57	45	7	5	42	1.54

Tables:   1   2   3

The End!