genome.fa.s886.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000886.1 Hibiscus syriacus cultivar Beakdansim tig00001731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  974096

Tables:   1   2   3   4   

This is table  3  of  4  ( 428 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577400--577659	131	2.0	131	86	1	360	36	14	13	35	1.86
578116--578147	11	2.9	11	95	0	55	53	25	12	9	1.68
580022--580214	86	2.2	86	82	1	226	33	15	20	31	1.94
579908--580344	218	2.0	218	83	5	542	31	15	21	32	1.94
580112--580574	135	3.4	134	80	4	504	31	15	21	31	1.94
581129--581531	213	1.9	213	87	2	594	33	15	15	35	1.89
581561--581613	20	2.7	20	93	0	88	26	20	30	22	1.98
585202--585246	19	2.4	19	96	0	81	15	13	26	44	1.83
591411--591730	128	2.5	130	81	4	335	37	16	10	35	1.84
594161--594252	46	2.0	46	100	0	184	36	13	13	36	1.83
597566--597602	3	12.3	3	100	0	74	67	0	0	32	0.91
598153--598188	18	2.0	18	100	0	72	33	11	11	44	1.75
599055--599145	46	2.0	46	97	0	173	29	18	24	27	1.98
603626--604013	157	2.5	156	82	2	474	29	17	7	44	1.77
615903--615940	18	2.1	18	90	0	58	28	7	0	63	1.23
616418--616460	19	2.3	19	88	8	61	16	9	4	69	1.31
622155--622210	27	2.1	26	86	3	76	25	16	28	30	1.96
622428--622470	20	2.3	19	88	8	61	18	6	4	69	1.29
623807--623928	61	2.0	61	100	0	244	34	3	18	44	1.66
624418--624477	32	1.9	32	86	10	88	36	8	25	30	1.85
624417--624477	16	3.9	15	81	8	68	37	8	24	29	1.84
628312--628336	13	1.9	13	100	0	50	0	32	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631893--631963	29	2.4	30	80	2	90	50	11	7	30	1.65
634226--634275	21	2.4	21	96	0	91	46	28	16	10	1.78
634924--634956	16	2.1	16	100	0	66	24	0	24	51	1.48
636988--637036	24	2.0	24	92	0	80	18	14	8	59	1.59
637019--637075	24	2.4	24	84	0	78	12	8	17	61	1.55
637294--637323	14	2.1	15	93	6	53	50	0	6	43	1.28
637524--637576	12	4.3	12	87	2	79	1	66	0	32	1.03
638005--638123	24	5.0	24	89	2	170	9	14	20	56	1.65
637991--638119	23	5.5	23	87	1	168	10	13	19	57	1.64
638056--638119	10	5.8	10	73	20	56	7	14	21	56	1.63
643864--643893	10	3.0	10	100	0	60	80	0	0	20	0.72
643864--643911	20	2.2	20	85	10	60	77	4	2	16	1.03
644745--644785	3	14.0	3	80	14	50	63	0	0	36	0.95
644953--645407	66	7.4	66	63	20	232	23	16	25	34	1.95
644948--645423	121	3.9	121	90	0	738	23	16	25	34	1.95
645426--645832	64	6.5	64	89	6	647	29	13	22	34	1.92
649488--649525	12	3.2	12	92	0	58	81	5	5	7	0.98
650383--650431	3	17.0	3	76	16	50	61	0	0	38	0.96
650383--650431	15	3.2	16	85	8	59	61	0	0	38	0.96
650383--650437	18	3.2	17	79	20	62	60	0	1	38	1.08
652572--652884	80	4.1	77	76	16	257	46	3	7	42	1.51
652572--652946	38	9.9	36	75	16	282	45	4	8	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652993--653057	5	12.2	5	83	16	78	21	3	0	75	0.94
652993--653057	16	4.1	15	81	18	78	21	3	0	75	0.94
652993--653057	11	6.1	10	83	16	78	21	3	0	75	0.94
654252--654294	18	2.2	20	84	12	54	23	6	2	67	1.27
658017--658130	22	5.2	22	70	8	88	21	15	2	59	1.48
658011--658140	44	3.0	44	87	0	188	20	17	2	59	1.49
661333--661639	153	2.0	154	98	0	598	39	16	20	23	1.92
663614--663959	37	9.1	37	75	14	287	43	4	8	42	1.57
663955--663979	12	2.1	12	100	0	50	24	0	8	68	1.16
663978--664067	32	2.8	32	83	3	110	41	2	7	48	1.44
665286--665388	32	3.3	30	80	13	91	21	7	1	68	1.24
665390--665418	13	2.1	14	93	6	51	20	3	0	75	0.94
665626--665755	65	2.0	65	100	0	260	44	12	16	26	1.83
668517--668556	20	2.0	20	90	4	64	55	17	0	27	1.43
669325--669708	141	2.7	143	85	3	470	34	9	17	37	1.84
672091--672264	87	2.0	87	100	0	348	41	9	6	42	1.63
672111--672286	87	2.0	87	84	4	230	44	10	4	39	1.60
690564--690649	41	2.1	41	93	0	145	22	18	16	43	1.88
691240--691590	124	2.8	124	91	0	558	25	15	25	33	1.95
691742--692125	64	6.0	64	88	3	569	30	11	22	35	1.90
691742--692125	127	3.0	127	88	3	567	30	11	22	35	1.90
691758--692125	191	1.9	191	90	2	587	30	11	22	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693806--693869	13	5.1	11	76	23	56	1	10	6	81	0.94
698540--698593	28	1.9	28	92	0	90	14	35	18	31	1.91
702547--702733	96	2.0	96	82	1	232	30	13	25	29	1.94
702677--702731	22	2.6	21	75	8	58	29	12	32	25	1.93
703051--703400	59	5.9	59	92	1	578	34	11	22	31	1.90
713241--713291	26	2.0	26	84	7	68	54	7	7	29	1.57
714488--714543	21	2.6	21	86	11	69	75	1	1	21	0.99
714454--714524	33	2.2	32	80	12	74	73	1	5	19	1.11
714533--714570	6	6.3	6	100	0	76	84	0	0	15	0.63
718205--718248	19	2.3	19	88	4	61	29	20	25	25	1.99
720450--720474	12	2.1	12	100	0	50	52	8	8	32	1.60
721425--721475	24	2.1	24	100	0	102	27	3	29	39	1.74
721437--721491	24	2.2	24	80	9	56	34	7	27	30	1.84
728269--728316	24	2.0	24	100	0	96	29	4	29	37	1.76
728278--728332	24	2.2	24	80	9	56	34	7	27	30	1.84
745269--745306	19	2.0	20	84	5	51	55	10	7	26	1.61
751052--751112	19	3.0	21	81	11	83	32	18	8	40	1.80
752741--752881	39	3.8	38	73	19	120	47	2	2	48	1.25
752788--752881	2	47.0	2	77	12	68	45	2	2	50	1.25
753539--753569	2	15.5	2	100	0	62	48	0	0	51	1.00
754611--755317	89	8.0	90	92	3	1099	28	19	26	25	1.99
755711--756030	160	2.0	160	100	0	640	25	23	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756625--756662	19	2.1	17	90	9	58	73	2	23	0	0.95
756996--757036	9	4.6	9	90	0	64	26	0	0	73	0.84
757123--757152	16	1.9	16	93	6	53	56	0	3	40	1.16
758156--758203	23	2.1	23	77	18	55	45	2	10	41	1.50
758501--758637	60	2.3	60	89	1	202	37	21	18	22	1.94
758616--758668	19	2.7	19	88	5	70	37	24	13	24	1.91
758501--758670	60	2.8	60	83	5	175	38	22	16	22	1.92
758457--758676	20	11.0	20	72	12	112	37	23	15	23	1.93
759616--759661	24	1.9	24	90	0	74	26	15	21	36	1.93
759615--759667	24	2.2	24	82	0	70	24	13	20	41	1.88
759850--759907	21	2.7	21	83	2	71	58	12	22	6	1.57
761931--761971	6	6.8	6	88	0	64	60	19	2	17	1.46
761931--761978	12	4.0	12	83	0	60	58	22	2	16	1.49
761931--761978	24	2.0	24	95	0	87	58	22	2	16	1.49
762316--762382	20	3.3	20	89	4	100	16	17	22	43	1.88
762435--762578	66	2.2	64	95	2	252	50	18	1	29	1.55
763777--763889	21	5.4	21	74	4	93	20	21	35	23	1.96
763777--763889	42	2.7	42	79	5	129	20	21	35	23	1.96
766478--766533	22	2.5	23	82	8	80	17	14	44	23	1.85
766640--766859	20	11.0	20	80	5	212	18	16	21	42	1.89
766642--766858	60	3.6	60	79	8	246	18	16	22	42	1.89
766864--766910	20	2.3	20	88	0	67	25	19	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768491--768884	186	2.1	184	91	4	639	46	7	3	42	1.48
769693--770134	35	11.9	35	75	16	226	44	3	7	44	1.50
769693--770134	38	11.9	36	75	12	206	44	3	7	44	1.50
769693--770124	75	5.8	71	75	15	328	44	3	7	43	1.49
769693--770125	37	11.6	37	77	13	358	45	3	7	43	1.49
769755--770125	112	3.3	108	77	11	342	45	2	7	44	1.46
769968--770015	25	2.0	25	83	4	62	45	0	10	43	1.38
769693--770117	149	2.9	144	78	12	432	44	3	8	44	1.49
770132--770188	18	3.2	18	82	12	64	29	3	0	66	1.08
770150--770180	14	2.2	14	94	0	53	29	3	0	67	1.06

Tables:   1   2   3   4