genome.fa.s886.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000886.1 Hibiscus syriacus cultivar Beakdansim tig00001731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  974096

Tables:   1   2   3   4   

This is table  4  of  4  ( 428 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770149--770176	7	4.0	7	100	0	56	28	0	0	71	0.86
771516--771550	6	5.7	6	96	3	61	31	0	0	68	0.90
786869--786920	23	2.4	22	77	6	61	23	38	19	19	1.93
790986--791456	85	5.5	85	89	1	683	34	20	18	25	1.96
792110--792360	38	6.8	37	81	7	264	36	1	9	52	1.44
792332--792383	23	2.2	24	86	6	70	38	0	11	50	1.39
792365--792465	39	2.6	39	84	4	132	46	2	4	45	1.40
792492--792544	26	2.0	26	81	0	61	13	5	1	79	0.99
794888--794943	27	2.1	27	86	0	76	42	7	12	37	1.70
794903--794952	26	1.9	26	84	8	66	48	8	10	34	1.66
801891--801944	27	2.0	28	92	3	92	24	12	16	46	1.82
802526--802566	19	2.2	19	90	0	64	34	17	29	19	1.94
805900--805951	27	1.9	27	88	0	77	21	17	17	44	1.87
807460--807484	2	12.5	2	100	0	50	52	0	0	48	1.00
809586--809614	2	14.5	2	100	0	58	51	0	0	48	1.00
810721--810778	29	2.0	29	83	6	73	41	17	6	34	1.76
821605--821654	15	2.9	18	72	22	54	44	0	0	56	0.99
829707--829763	19	3.0	18	77	10	60	35	15	0	49	1.45
832470--832533	29	2.1	31	85	5	87	40	6	20	32	1.77
851833--851884	20	2.6	20	93	0	95	30	23	28	17	1.97
851875--851937	19	3.2	19	77	11	56	22	30	28	19	1.98
855556--855651	17	5.2	17	70	18	59	51	3	2	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855549--855600	22	2.3	22	83	6	59	51	3	1	42	1.31
855567--855609	22	1.9	23	90	4	70	46	4	2	46	1.36
855616--855693	24	3.0	25	83	11	95	53	3	1	41	1.27
855545--855660	58	2.0	58	87	3	169	50	3	2	43	1.33
855625--855664	12	3.3	12	80	13	55	62	5	0	32	1.17
855546--855680	58	2.3	58	82	7	157	49	2	2	44	1.32
856733--856786	25	2.0	27	82	10	67	35	5	5	53	1.48
856962--857016	16	3.4	16	87	0	83	40	12	27	20	1.88
864021--864115	20	5.0	19	79	8	113	21	22	31	25	1.98
864022--864114	18	4.9	18	83	7	114	20	21	32	25	1.98
864022--864115	38	2.5	38	89	0	152	21	21	31	25	1.98
864480--864514	4	8.5	4	93	6	61	25	0	25	48	1.51
866978--867026	20	2.5	20	100	0	98	34	20	18	26	1.95
881581--881628	24	2.0	24	87	0	69	22	10	20	45	1.81
881622--881685	24	2.6	25	80	4	69	15	20	20	43	1.87
882588--882639	23	2.3	23	96	0	95	40	5	36	17	1.73
887915--887969	24	2.3	24	80	0	65	20	23	18	38	1.93
891952--892026	31	2.4	31	88	4	107	50	16	10	22	1.75
900859--901179	54	5.9	54	85	2	376	27	17	18	36	1.93
900818--901179	162	2.2	162	84	0	447	27	17	18	35	1.94
905021--905073	20	2.5	21	81	9	63	54	16	13	15	1.71
906744--906787	17	2.5	17	85	10	54	65	0	9	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908701--908741	2	21.0	2	95	5	75	51	0	0	48	1.00
910354--911973	233	7.0	233	85	2	2123	32	16	17	34	1.92
911622--911702	42	2.0	41	85	2	108	27	20	19	32	1.97
910354--911973	699	2.3	691	88	1	2341	32	16	17	34	1.92
911981--912096	42	2.8	42	82	0	124	31	18	20	30	1.96
914051--914347	130	2.3	130	79	6	332	32	11	12	42	1.79
918634--918674	3	14.0	3	80	14	50	29	0	2	68	1.03
918634--918670	15	2.6	14	91	4	56	29	0	2	67	1.04
918812--918870	30	2.0	30	93	0	100	18	32	32	16	1.94
919127--919180	23	2.3	23	90	0	90	81	9	9	0	0.88
919143--919174	17	1.9	16	93	6	55	81	9	9	0	0.88
925340--925393	25	2.3	23	81	15	65	29	0	5	64	1.16
925655--925697	15	2.9	15	100	0	86	34	4	0	60	1.17
949067--949272	89	2.3	89	89	3	308	34	22	17	25	1.96
949315--949584	73	3.7	72	84	5	312	41	17	16	24	1.89
949315--949584	36	7.4	36	81	4	301	41	17	16	24	1.89
955035--955367	178	1.9	177	82	4	420	32	17	16	34	1.92
955209--956101	240	3.7	238	86	2	1139	33	15	15	35	1.89
955932--956044	42	2.7	42	78	4	113	26	21	21	30	1.98
956392--956859	130	3.6	129	84	4	575	30	19	18	31	1.96
957044--957086	23	1.9	22	95	4	77	25	0	6	67	1.15
966769--966894	40	3.2	40	97	0	243	28	30	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970205--970300	15	6.4	15	92	0	156	14	9	34	41	1.78
970205--970300	45	2.1	45	96	0	174	14	9	34	41	1.78

Tables:   1   2   3   4

The End!