genome.fa.s8880.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008880.1 Hibiscus syriacus cultivar Beakdansim tig00112124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  568240

Tables:   1   2   3   

This is table  2  of  3  ( 274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228921--229003	41	2.0	40	88	6	123	46	1	1	50	1.16
228908--229006	26	3.9	25	76	17	91	49	1	1	48	1.14
228952--229009	26	2.2	27	93	3	100	53	1	0	44	1.10
228998--229045	22	2.1	23	96	3	89	37	0	12	50	1.41
229086--229128	21	2.1	21	91	4	70	37	0	11	51	1.39
229152--229209	30	1.9	31	89	3	91	41	10	6	41	1.66
229227--229269	16	2.7	16	92	0	68	23	6	6	62	1.45
240465--240661	59	3.3	59	82	4	220	45	10	17	26	1.80
243479--243532	21	2.7	20	88	5	90	12	18	24	44	1.85
243644--243890	43	5.8	43	81	1	273	34	18	22	24	1.96
243626--243890	85	3.1	85	82	2	298	34	19	22	23	1.97
243644--243886	128	1.9	128	85	1	335	34	17	22	25	1.96
247188--247277	45	2.0	45	91	4	146	52	10	17	20	1.73
253720--253779	10	6.3	9	81	14	52	83	3	3	10	0.88
253735--253779	18	2.4	18	85	7	54	86	4	0	8	0.69
253784--253818	2	17.5	2	93	0	61	51	0	0	48	1.00
253857--253932	28	2.7	28	82	11	77	72	5	5	17	1.22
256249--256771	43	11.4	43	65	16	214	22	18	25	33	1.96
256223--257174	94	10.0	94	90	4	1303	23	17	25	33	1.96
256223--257174	186	5.0	188	87	6	1287	23	17	25	33	1.96
256863--257174	106	2.9	106	93	0	509	23	16	25	33	1.96
258585--258953	183	2.0	186	98	1	717	34	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261195--261236	20	2.0	21	86	4	59	80	2	4	11	0.95
261323--261398	28	2.7	28	82	11	77	72	5	5	17	1.22
262813--262844	13	2.5	13	94	0	55	56	0	0	43	0.99
263115--263157	22	1.9	23	90	4	70	25	0	9	65	1.22
274982--275024	21	2.0	21	86	0	59	48	4	20	25	1.69
277808--277856	19	2.6	19	96	0	89	16	32	26	24	1.96
281651--281694	21	2.0	22	86	4	63	52	4	29	13	1.60
291471--292062	316	1.9	317	93	2	1037	30	16	17	35	1.92
300957--300991	18	1.9	18	88	0	52	22	37	0	40	1.55
313078--314928	927	2.0	922	91	2	3000	32	15	16	34	1.91
316298--316371	30	2.5	31	77	6	80	35	4	14	45	1.64
320757--320812	21	2.7	21	80	0	67	28	14	23	33	1.94
326912--326974	23	2.7	24	80	7	67	47	1	0	50	1.10
327481--327506	5	5.2	5	100	0	52	0	19	57	23	1.40
332481--332576	45	2.1	47	86	5	135	30	12	19	37	1.89
336133--336169	18	2.1	18	100	0	74	32	5	35	27	1.79
342260--342296	10	3.5	11	86	13	51	78	0	5	16	0.93
342260--342401	9	15.4	9	70	20	75	73	0	16	10	1.10
342250--342295	11	3.8	12	83	13	51	78	0	8	13	0.97
342237--342450	75	2.9	70	75	16	175	73	0	15	10	1.08
342247--342429	7	23.5	8	72	20	83	73	0	16	9	1.08
342247--342443	44	4.6	43	73	19	157	74	0	15	10	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342447--342527	43	1.9	42	87	2	117	37	18	29	14	1.91
343777--344258	217	2.2	220	83	4	591	28	14	24	32	1.95
343777--344258	55	8.8	55	84	6	498	28	14	24	32	1.95
343777--344236	110	4.2	111	86	5	560	28	15	24	32	1.95
349778--349814	19	1.9	19	89	10	58	32	13	8	45	1.73
352432--352470	17	2.2	17	86	9	51	58	17	12	10	1.61
362274--362492	63	3.5	62	78	10	214	32	20	19	27	1.97
366396--366749	31	11.5	31	90	4	520	21	18	21	38	1.94
372255--372320	20	3.5	19	80	16	84	43	21	18	16	1.87
372255--372307	16	3.1	16	78	10	52	45	20	18	15	1.85
372352--372440	20	4.4	20	88	0	106	24	23	17	33	1.96
372459--372586	20	6.4	19	80	9	148	35	16	24	24	1.95
372466--372711	40	5.9	40	77	8	213	32	17	24	25	1.96
372465--372584	60	2.0	60	86	0	168	33	16	25	24	1.96
372536--372643	21	5.3	20	85	2	108	35	15	24	25	1.94
372492--372613	60	2.0	61	83	1	156	33	18	25	22	1.96
372576--372643	21	3.3	21	95	2	120	35	14	23	26	1.94
372642--372716	20	3.8	20	89	0	96	30	17	26	25	1.97
372514--372754	129	1.9	129	85	1	340	30	16	26	26	1.97
372534--372736	109	1.9	109	86	0	289	32	16	25	25	1.96
372668--372750	20	4.1	20	81	6	78	27	16	28	26	1.97
372776--372815	20	2.0	20	95	0	71	25	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372834--373030	20	9.6	20	70	10	137	30	14	26	28	1.95
372810--373005	86	2.3	87	85	0	259	31	15	26	26	1.96
372920--373043	40	3.1	40	85	2	160	29	15	26	29	1.96
372972--373055	40	2.1	40	86	2	114	34	15	20	29	1.93
373070--373118	20	2.4	20	82	3	62	30	14	28	26	1.95
373167--373233	20	3.3	20	78	0	80	22	17	17	41	1.90
375248--375298	21	2.4	22	80	6	61	37	3	3	54	1.37
379718--379781	18	3.8	17	75	19	62	39	0	1	59	1.07
381273--381319	17	2.6	17	83	12	51	68	0	8	23	1.17
381272--381333	13	4.4	14	78	15	58	67	0	9	22	1.19
390770--390820	26	2.0	26	100	0	102	21	15	15	47	1.83
397663--397704	21	2.0	20	86	4	57	40	7	14	38	1.73
402291--402329	20	2.0	20	100	0	78	33	10	15	41	1.81
402331--402372	21	2.0	20	86	4	57	40	7	14	38	1.73
409917--410010	30	3.2	29	92	4	152	34	3	24	38	1.72
410082--410142	29	2.1	30	90	3	97	32	4	19	42	1.73
409949--410206	129	2.0	129	98	0	498	36	12	14	36	1.84
413271--413337	29	2.3	30	92	2	109	31	4	25	38	1.76
418140--418177	21	1.9	20	89	10	60	23	36	15	23	1.94
418207--418244	20	1.9	20	88	0	58	28	23	10	36	1.88
424814--424846	16	2.1	16	94	0	57	24	30	0	45	1.53
430531--430579	25	2.0	25	87	0	71	30	20	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433390--433455	30	2.2	30	81	7	73	15	28	22	33	1.94
436053--436157	24	4.5	24	95	4	182	34	19	21	24	1.96
437403--437533	67	2.0	68	92	7	227	32	5	12	50	1.62
441889--441958	31	2.2	33	92	5	117	22	12	35	28	1.91
444752--444788	17	2.2	17	95	4	67	32	0	0	67	0.91
445970--446015	19	2.4	19	81	3	56	34	4	6	54	1.46
446448--446514	19	3.5	19	82	10	82	56	8	1	32	1.39
446613--447044	215	2.0	217	98	1	834	50	6	13	29	1.66
448146--448248	45	2.3	44	90	5	154	30	16	23	30	1.96
448236--448282	19	2.5	19	83	10	62	25	17	31	25	1.97
448500--448539	20	2.0	21	85	14	57	45	7	2	45	1.45
449163--449206	21	2.1	21	86	0	61	38	15	36	9	1.80
455948--456111	65	2.5	64	84	1	220	27	15	26	31	1.96
456330--456369	20	2.0	21	85	14	57	45	7	5	42	1.54
460319--460357	19	2.1	19	100	0	78	15	25	23	35	1.94
460747--460795	17	3.1	17	74	14	59	44	4	4	46	1.41
463061--463092	16	2.0	16	100	0	64	31	6	50	12	1.65
471297--471339	20	2.2	20	86	0	59	34	20	13	30	1.92
476249--476291	20	2.2	20	86	0	59	34	20	13	30	1.92
480032--480100	32	2.1	33	84	7	88	50	27	7	14	1.69
480082--480480	211	1.9	206	88	6	595	37	24	12	25	1.91
480146--480531	211	1.8	211	84	5	519	38	24	11	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485942--486080	61	2.3	61	82	3	165	43	3	20	33	1.69
491468--491494	6	4.5	6	100	0	54	55	0	0	44	0.99
492900--492947	11	4.3	11	82	10	53	62	0	2	35	1.07
493558--493925	106	3.5	105	86	1	486	22	18	25	34	1.96
495668--495719	25	2.0	27	88	11	81	0	17	9	73	1.09
500819--500903	43	2.0	42	93	2	143	17	15	24	42	1.88
501359--501859	55	9.2	54	80	9	352	31	24	15	28	1.95
501447--501874	161	2.6	162	84	5	521	31	24	15	28	1.95
501392--501859	110	4.3	110	84	6	594	30	24	15	28	1.96
501425--501874	55	8.3	52	82	7	417	31	24	15	28	1.95

Tables:   1   2   3