genome.fa.s8880.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008880.1 Hibiscus syriacus cultivar Beakdansim tig00112124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  568240

Tables:   1   2   3   

This is table  3  of  3  ( 274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501878--501982	38	2.8	38	98	0	201	20	20	18	41	1.90
503274--503357	14	6.3	14	73	13	54	5	19	1	73	1.10
503319--503357	20	2.0	20	84	0	51	2	17	0	79	0.84
513037--513140	45	2.3	46	94	3	183	40	21	8	29	1.83
517734--517840	33	3.2	34	78	14	89	34	0	3	61	1.14
517765--517841	33	2.4	33	85	10	97	38	0	1	59	1.06
517765--517839	30	2.5	30	82	6	80	38	0	1	60	1.06
517981--518034	17	3.2	17	72	0	54	31	0	3	64	1.11
519565--519612	21	2.3	21	85	0	60	25	39	12	22	1.89
519616--519709	21	4.5	21	89	5	120	18	34	26	21	1.96
520232--520328	33	2.9	34	85	3	133	55	4	3	37	1.35
520230--520335	34	3.2	33	82	8	133	54	4	2	37	1.36
520719--521351	128	4.9	128	97	0	1169	32	19	24	22	1.97
521419--521457	8	5.0	8	81	6	53	38	28	0	33	1.57
535955--536190	42	5.5	43	80	6	228	32	18	19	28	1.96
535957--536190	130	1.8	130	81	3	292	32	18	20	29	1.96
541747--541799	21	2.5	21	78	0	61	20	22	16	39	1.92
541789--541921	20	6.7	20	92	0	221	42	21	17	19	1.90
541921--541990	20	3.5	20	98	0	131	27	27	18	27	1.98
541912--541990	40	2.0	40	92	0	131	29	27	18	24	1.98
542354--542449	33	2.9	34	90	3	149	12	21	20	44	1.85
542376--542429	14	3.5	14	73	22	54	11	24	20	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542555--542591	14	2.6	14	86	0	56	48	21	0	29	1.50
543944--544035	42	2.2	42	82	3	105	22	17	34	25	1.96
544546--544614	20	3.5	20	89	0	102	37	24	18	18	1.94
544663--544835	20	9.3	20	80	15	185	19	18	20	41	1.90
544679--544812	33	3.8	34	81	9	146	16	18	20	44	1.87
546715--546755	20	2.0	20	95	0	73	58	19	12	9	1.61
546740--546791	20	2.6	20	78	0	59	38	26	19	15	1.91
547109--547174	22	3.0	22	90	0	105	21	15	39	24	1.91
547392--547444	21	2.5	21	81	0	70	37	16	24	20	1.93
553886--553969	26	3.3	26	74	12	102	34	8	7	50	1.60
553884--553980	50	1.9	50	97	0	185	35	7	9	48	1.63
553901--553980	26	3.2	26	70	13	85	36	7	11	45	1.68

Tables:   1   2   3

The End!