genome.fa.s8904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008904.1 Hibiscus syriacus cultivar Beakdansim tig00112184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  372056

Tables:   1   2   3   

This is table  1  of  3  ( 268 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9316--9393	15	5.3	15	74	8	72	50	2	1	46	1.23
9298--9437	21	6.5	22	69	18	73	48	2	2	46	1.29
9329--9394	30	2.2	30	88	0	96	51	3	1	43	1.26
9462--9514	21	2.5	21	82	11	72	50	3	5	39	1.44
9561--9655	20	4.6	20	68	27	56	44	4	7	44	1.51
9607--9660	2	26.5	2	81	10	65	44	1	3	50	1.30
9589--9646	24	2.4	24	85	5	82	44	5	5	44	1.48
9557--9681	65	1.9	64	82	6	153	44	4	7	44	1.53
9644--9717	37	2.1	36	84	5	96	39	8	8	44	1.64
9827--9865	14	2.8	14	88	0	51	28	0	20	51	1.48
9820--9871	21	2.5	21	83	0	59	23	0	25	51	1.48
9898--9957	24	2.6	23	84	10	70	40	5	3	51	1.40
9897--9947	24	2.1	24	92	7	86	41	5	3	49	1.45
10105--10417	2	165.0	2	64	23	81	45	4	2	47	1.37
10141--10299	73	2.2	73	88	3	230	44	5	2	47	1.40
10605--10768	21	8.0	21	73	15	137	22	21	21	34	1.97
10605--10768	42	4.0	40	88	7	213	22	21	21	34	1.97
10611--10732	61	2.0	60	81	9	140	21	21	23	33	1.97
11621--12137	42	12.5	42	90	2	735	33	23	20	22	1.97
11621--12137	82	6.3	83	90	2	738	33	23	20	22	1.97
11621--12137	166	3.1	166	90	1	790	33	23	20	22	1.97
13519--13554	17	2.2	16	90	9	56	25	5	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14170--14198	9	3.2	9	100	0	58	34	0	0	65	0.93
18538--18572	16	2.3	15	95	5	61	34	0	0	65	0.93
20084--20208	45	2.8	44	86	3	169	28	14	20	36	1.92
20088--20191	44	2.3	45	90	1	156	31	15	19	33	1.93
30477--30540	29	2.2	30	82	2	76	37	4	23	34	1.76
32081--32201	49	2.6	45	80	10	143	40	7	20	31	1.80
33957--34011	6	9.2	6	100	0	110	16	16	34	32	1.91
39032--39152	49	2.6	45	80	10	143	40	7	20	31	1.80
40283--40445	7	22.4	7	70	18	52	73	0	19	6	1.08
40276--40445	14	11.8	13	67	22	65	72	0	20	6	1.10
40282--40372	8	11.6	8	70	18	59	74	0	20	4	0.98
40258--40358	49	2.1	47	85	3	130	70	0	20	8	1.14
40355--40445	7	13.6	7	78	13	68	74	1	17	6	1.09
41477--41511	17	2.1	17	89	10	54	42	2	25	28	1.69
41820--42125	55	5.6	55	86	5	379	28	16	23	30	1.97
41820--42173	110	3.2	109	82	9	332	29	16	22	30	1.96
41820--42162	165	2.1	165	82	4	406	28	17	23	30	1.97
41863--42200	55	6.1	55	79	9	247	29	16	22	31	1.96
45316--45379	33	1.9	34	84	9	87	46	4	0	48	1.23
54880--54963	15	5.6	15	71	18	68	52	1	1	45	1.16
54890--54930	21	2.0	20	86	13	57	46	0	0	53	1.00
54911--54978	31	2.2	31	89	0	100	52	2	1	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54880--54985	46	2.4	44	78	9	108	50	1	0	46	1.18
54921--55099	87	2.0	88	86	5	247	49	4	4	41	1.43
55046--55098	21	2.5	21	82	11	72	50	3	5	39	1.44
55173--55250	2	37.5	2	74	12	59	42	5	5	47	1.47
55144--55258	24	5.2	22	77	13	112	42	5	6	45	1.53
55141--55271	67	1.9	67	86	6	183	43	5	6	44	1.53
55421--55459	14	2.8	14	88	0	51	28	0	20	51	1.48
55414--55465	21	2.5	21	83	0	59	23	0	25	51	1.48
55491--55542	25	2.1	24	92	3	86	42	5	3	48	1.45
55506--55555	20	2.6	19	84	6	64	40	8	2	50	1.43
55700--56015	2	166.0	2	65	21	101	45	3	2	47	1.35
55738--55893	70	2.2	71	87	4	217	44	5	2	48	1.38
56203--56367	21	8.0	21	73	14	137	23	21	21	33	1.97
56203--56367	42	4.0	40	88	6	213	23	21	21	33	1.97
56209--56330	61	2.0	60	81	9	140	21	21	23	33	1.97
57228--57744	42	12.5	42	90	2	735	33	23	20	22	1.97
57228--57744	82	6.3	83	90	2	738	33	23	20	22	1.97
57228--57744	166	3.1	166	90	1	790	33	23	20	22	1.97
59785--59816	10	3.2	10	100	0	64	31	0	0	68	0.90
64154--64189	16	2.3	15	95	4	63	36	0	0	63	0.94
65701--65807	44	2.4	44	87	3	153	30	14	20	33	1.93
76091--76154	29	2.2	30	82	2	76	37	4	23	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77693--77813	49	2.6	45	80	10	143	40	7	20	31	1.80
79568--79622	6	9.2	6	100	0	110	16	16	34	32	1.91
84638--84759	49	2.6	46	79	11	138	40	7	20	31	1.80
85887--85977	8	11.6	8	70	18	59	74	0	20	4	0.98
85863--85963	49	2.1	47	85	3	130	70	0	20	8	1.14
85961--86050	6	13.7	6	72	19	56	75	1	17	5	1.05
85956--86050	39	2.6	37	80	12	106	74	1	18	5	1.06
85870--86050	14	12.5	14	67	24	74	72	0	19	6	1.10
87082--87116	17	2.1	17	89	10	54	42	2	25	28	1.69
87425--87730	55	5.6	55	85	5	361	29	16	23	30	1.96
87425--87767	165	2.1	165	81	4	388	29	16	23	30	1.96
87464--87815	55	6.4	55	77	8	176	29	16	22	32	1.95
89455--89487	2	16.5	2	100	0	66	48	0	0	51	1.00
90926--90989	33	1.9	34	84	9	87	46	4	0	48	1.23
91628--91970	55	6.2	54	84	4	316	29	16	22	31	1.96
91628--91932	165	1.8	165	81	5	375	28	16	22	32	1.96
91628--91970	165	2.1	165	80	6	374	29	16	22	31	1.96
93601--93640	15	2.6	16	88	4	55	30	0	7	62	1.23
110072--110144	36	2.0	36	89	0	110	31	8	21	38	1.83
110918--110975	17	3.6	16	72	11	55	41	0	1	56	1.09
111063--111107	22	2.0	23	82	4	56	55	0	4	40	1.20
111117--111186	13	5.4	13	69	6	52	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111921--111965	19	2.2	21	84	7	58	53	2	0	44	1.13
115649--115702	19	2.8	19	80	5	65	22	1	12	62	1.39
117435--117514	3	26.7	3	100	0	160	33	0	0	66	0.92
117757--117841	40	2.1	41	80	8	93	32	16	0	50	1.45
118999--119048	20	2.5	20	86	0	73	32	24	16	28	1.96
119035--119109	21	3.7	20	71	10	62	38	22	17	21	1.93
119025--119103	41	1.9	41	89	0	122	39	22	15	22	1.91
118992--119109	61	1.9	62	82	5	150	37	22	16	23	1.93
119277--119320	22	2.0	22	95	0	79	20	45	15	18	1.85
119572--119628	20	2.8	20	83	0	60	22	19	17	40	1.91
120949--120989	18	2.3	18	86	0	64	24	46	17	12	1.82
121474--121540	20	3.4	20	81	2	73	38	23	22	14	1.92
121529--121583	14	3.6	14	77	17	65	49	23	16	10	1.77
121513--121603	32	2.8	33	93	6	159	46	21	18	13	1.83
121620--121710	14	5.9	14	70	20	65	13	17	20	48	1.81
121615--121726	33	3.4	33	96	1	199	13	18	20	47	1.82
121710--121766	20	2.9	20	82	12	73	15	22	22	38	1.92
122135--122215	40	2.0	42	90	4	130	22	43	14	19	1.88
123633--123668	14	2.6	14	90	0	54	30	0	22	47	1.52
123795--123848	14	3.5	14	73	22	54	48	18	20	12	1.81
123890--123949	20	3.0	21	68	9	61	16	21	18	43	1.88
123860--123962	40	2.9	34	74	16	98	16	22	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124233--124266	12	2.9	12	86	4	52	17	41	5	35	1.74
124821--124874	24	2.2	24	90	0	81	22	16	20	40	1.91
125049--125073	12	2.1	12	100	0	50	72	0	28	0	0.86
127363--127493	19	7.7	19	65	23	85	42	19	22	15	1.88
127363--127489	33	3.8	33	87	4	193	42	18	22	15	1.89
127364--127496	66	2.0	66	95	0	239	41	18	22	17	1.90
127651--127685	14	2.6	14	95	4	63	42	25	0	31	1.55
129038--129104	21	3.2	21	65	4	55	19	19	35	25	1.95
131258--131361	18	6.2	17	71	22	94	40	23	25	11	1.88
131256--131352	33	3.0	33	93	1	169	39	23	25	11	1.88

Tables:   1   2   3