genome.fa.s8920.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008920.1 Hibiscus syriacus cultivar Beakdansim tig00112224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1287743

Tables:   1   2   3   4   

This is table  2  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376013--376046	16	2.1	17	89	10	54	70	5	0	23	1.09
379914--379977	10	6.5	10	78	8	69	1	7	15	75	1.11
379914--379976	30	2.1	30	88	5	92	1	7	14	76	1.08
379921--379959	20	2.0	20	100	0	78	0	5	15	79	0.90
379921--379968	11	4.5	11	87	12	73	0	8	14	77	0.99
380732--380765	16	2.1	17	89	10	54	70	5	0	23	1.09
380825--380870	22	2.0	22	83	12	56	52	13	2	32	1.52
381723--381762	17	2.4	17	95	0	71	50	0	7	42	1.30
388542--388603	29	2.1	30	81	3	72	41	16	20	20	1.90
392826--392886	24	2.6	23	74	7	61	8	16	9	65	1.45
393700--393876	90	2.0	90	84	2	230	29	21	27	21	1.99
395222--395255	2	17.0	2	100	0	68	50	0	0	50	1.00
399758--399813	10	5.2	10	75	23	51	85	5	8	0	0.73
399758--399808	14	3.8	13	82	14	59	86	3	9	0	0.70
409815--409847	10	3.4	10	83	8	50	81	3	15	0	0.80
409833--409874	13	3.4	12	78	15	50	78	0	16	4	0.91
409826--409881	26	2.2	26	81	12	62	75	3	14	7	1.16
414589--414627	18	2.2	18	90	0	60	28	20	23	28	1.99
434787--434838	19	2.6	20	87	6	70	42	5	15	36	1.71
438222--438266	8	5.5	8	87	12	65	0	20	2	77	0.87
438213--438269	16	3.6	16	86	13	73	0	19	3	77	0.92
438992--439041	19	2.6	19	90	6	75	46	6	14	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441986--442037	21	2.6	21	90	6	81	34	13	5	46	1.67
442703--442729	11	2.5	11	100	0	54	74	7	18	0	1.05
444568--444600	16	2.1	16	94	0	57	36	15	6	42	1.71
449153--449236	36	2.3	36	95	0	150	29	35	4	29	1.78
451712--451754	22	2.0	22	90	0	68	13	0	25	60	1.34
453457--453502	18	2.6	18	92	0	74	34	6	10	47	1.64
454662--454712	20	2.6	20	90	3	77	43	5	17	33	1.73
457005--457059	26	2.1	26	86	6	76	60	0	25	14	1.35
457188--457263	35	2.2	35	85	0	98	35	3	34	26	1.75
460341--460391	20	2.6	20	90	3	77	31	11	7	49	1.68
462841--462880	16	2.5	16	95	0	71	30	12	0	57	1.36
464491--464534	16	2.6	16	83	16	54	79	4	15	0	0.89
464492--464526	16	2.2	17	90	10	56	80	5	14	0	0.89
464710--464762	16	3.1	16	81	8	52	16	20	0	62	1.33
465575--465646	18	4.2	18	64	10	51	34	1	9	54	1.42
467668--467713	22	2.0	22	83	12	56	52	13	2	32	1.52
472932--472964	16	2.1	16	100	0	66	42	6	18	33	1.75
476533--476565	16	2.1	16	100	0	66	42	6	18	33	1.75
495359--495442	35	2.4	35	81	0	96	28	32	4	34	1.78
502652--502680	15	2.0	15	93	6	51	75	3	20	0	0.94
503925--503968	23	2.0	21	82	13	52	36	18	9	36	1.82
513672--513715	21	2.1	21	84	12	56	4	9	6	79	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514545--514931	192	2.0	192	96	0	711	20	21	26	30	1.98
515995--516031	16	2.4	15	86	8	56	83	0	13	2	0.74
517192--517234	23	1.9	21	81	13	50	30	18	16	34	1.93
518646--518685	17	2.4	17	86	0	53	32	15	12	40	1.84
518742--518783	18	2.3	18	95	0	75	33	7	9	50	1.62
522264--522303	17	2.4	17	86	0	53	32	15	12	40	1.84
522359--522404	18	2.6	18	92	0	74	32	6	13	47	1.68
532582--532678	26	3.7	26	87	0	149	18	34	19	27	1.95
536217--536246	13	2.4	13	94	5	53	43	0	30	26	1.55
540854--540896	23	1.9	21	81	13	50	34	13	18	32	1.90
542102--542139	16	2.6	14	84	15	58	0	21	0	78	0.74
547526--547565	19	2.2	19	86	4	55	5	10	5	80	1.02
551193--551232	22	1.9	22	90	10	66	45	10	20	25	1.81
551372--551609	113	2.1	114	98	1	462	48	8	14	28	1.73
556944--556983	22	1.9	22	90	10	66	45	10	20	25	1.81
560552--560578	14	1.9	14	100	0	54	37	0	40	22	1.54
578297--578336	22	1.9	22	90	10	66	45	10	20	25	1.81
579548--579588	21	1.9	22	85	5	57	21	19	14	43	1.87
581727--581753	14	1.9	14	100	0	54	37	0	40	22	1.54
585962--586010	16	2.9	16	84	6	53	61	0	22	16	1.34
586204--586235	15	2.1	16	94	5	57	0	9	6	84	0.78
584631--586456	915	2.0	914	97	2	3433	30	15	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586440--586488	15	3.1	16	82	11	57	61	0	26	12	1.31
588273--588307	14	2.4	14	95	4	61	57	14	0	28	1.38
596481--596530	19	2.5	20	93	3	84	48	6	12	34	1.65
599836--599879	6	7.3	6	82	10	54	0	13	4	81	0.83
600057--600101	12	3.7	12	85	5	63	68	0	15	15	1.21
600048--600110	25	2.5	25	77	10	74	61	0	19	19	1.34
600638--600680	20	2.2	20	95	4	79	48	4	11	34	1.60
613878--613913	18	1.9	18	88	5	54	2	13	0	83	0.76
620063--620303	41	5.9	40	82	2	257	35	20	12	31	1.89
620044--620303	82	3.2	81	83	2	313	36	20	11	31	1.89
620044--620303	123	2.1	123	83	0	322	36	20	11	31	1.89
627144--627189	22	2.1	22	84	11	60	23	26	23	26	2.00
631112--631171	17	3.5	17	84	6	68	35	16	8	40	1.79
638072--638115	19	2.2	21	88	8	65	75	0	6	18	1.02
640204--640256	17	3.1	17	80	0	52	41	11	3	43	1.58
644360--644402	23	1.9	21	81	13	50	32	18	13	34	1.90
649657--649727	17	4.1	17	71	8	54	42	12	7	38	1.70
663649--663677	15	1.9	15	100	0	58	41	13	0	44	1.44
663732--663905	41	4.2	41	90	0	240	34	21	8	35	1.83
663764--663927	82	2.0	82	83	4	206	34	20	9	34	1.86
670395--670441	14	3.1	15	75	12	51	72	6	19	2	1.17
671705--671790	13	7.2	12	72	22	58	29	3	37	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671689--671791	36	2.9	36	94	2	174	29	4	35	30	1.78
675730--675814	11	7.2	12	67	26	56	30	1	36	31	1.65
675729--675829	22	4.3	22	67	25	64	29	1	35	32	1.69
675729--675833	36	2.9	36	90	1	158	29	2	36	31	1.72
683578--683616	19	2.1	19	100	0	78	10	15	10	64	1.50
685453--685484	12	2.6	13	85	14	50	9	12	6	71	1.29
688351--688798	46	9.8	46	88	0	610	40	14	21	23	1.90
691540--691564	9	2.8	9	100	0	50	80	0	20	0	0.72
696778--696822	2	22.5	2	90	0	72	51	46	2	0	1.13
698072--698109	13	3.0	13	84	3	51	36	36	2	23	1.69
698131--698182	17	3.0	18	79	20	58	19	15	0	65	1.27
698131--698181	18	2.9	19	81	18	58	19	15	0	64	1.29
698140--698217	23	3.2	24	75	17	81	19	15	0	65	1.27
698383--698449	19	3.7	18	67	25	52	79	1	11	7	1.00
698383--698449	27	2.4	29	78	11	79	79	1	11	7	1.00
701989--702379	195	2.0	195	97	0	737	28	24	16	31	1.96
703004--703067	23	2.7	24	83	11	78	23	14	0	62	1.31
706350--706398	20	2.5	20	86	0	62	32	16	22	28	1.95
706806--707109	46	6.6	46	85	2	387	41	13	20	24	1.88
706806--707101	138	2.1	138	89	1	441	42	13	20	23	1.87
713700--713743	22	1.9	23	86	9	63	45	0	22	31	1.53
717382--717434	20	2.6	20	82	11	63	32	18	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723173--723457	45	6.4	45	82	5	256	30	20	9	39	1.84
723173--723494	89	3.6	88	78	7	283	30	20	9	39	1.85
723173--723457	134	2.1	134	80	5	308	30	20	9	39	1.84
723242--723494	134	1.9	134	81	4	314	28	21	10	39	1.87
738565--738689	66	1.9	66	84	0	169	22	5	28	44	1.75
743205--743253	5	9.6	5	82	4	62	77	0	2	20	0.87
745552--745755	66	3.0	68	81	8	231	22	7	29	40	1.81
756336--756471	43	3.1	44	71	15	111	39	5	8	46	1.57
756703--756760	23	2.5	23	82	0	80	13	27	12	46	1.79
757248--757592	172	2.0	177	81	7	411	38	6	7	47	1.59

Tables:   1   2   3   4