genome.fa.s8923.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008923.1 Hibiscus syriacus cultivar Beakdansim tig00112227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  468757

Tables:   1   2   3   

This is table  2  of  3  ( 284 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264893--264927	13	2.6	14	86	9	54	45	8	14	31	1.75
266384--266461	39	2.0	39	87	0	111	24	6	11	57	1.57
276466--276516	24	2.1	24	100	0	102	25	27	11	35	1.91
278603--278641	16	2.4	16	86	0	51	38	0	5	56	1.22
278826--278856	14	2.2	14	94	0	53	32	0	6	61	1.21
279669--279705	2	19.0	2	94	5	67	48	0	0	51	1.00
282053--282161	49	2.2	50	85	1	148	28	10	21	40	1.85
280752--282356	790	2.0	802	95	4	2894	40	11	11	37	1.77
282461--282490	15	2.1	15	93	6	53	56	6	13	23	1.60
286586--286644	29	2.0	29	100	0	118	23	13	13	49	1.78
287133--287169	18	2.0	20	89	10	60	37	10	0	51	1.37
288432--288466	13	2.6	14	86	9	54	45	8	14	31	1.75
289913--289990	39	2.0	39	87	0	111	24	6	11	57	1.57
292199--292229	14	2.2	14	94	0	53	32	0	6	61	1.21
295525--295645	49	2.5	50	87	2	174	31	9	19	39	1.83
295953--295983	15	2.1	15	100	0	62	58	6	12	22	1.58
296665--296701	18	2.0	20	89	10	60	37	10	0	51	1.37
297977--298011	13	2.6	14	86	9	54	45	8	14	31	1.75
310809--310922	49	2.3	50	90	1	176	29	9	20	40	1.84
311310--311346	18	2.0	20	89	10	60	37	10	0	51	1.37
313620--313678	30	2.0	30	87	12	86	33	1	0	64	1.04
313787--313860	19	4.1	18	71	16	55	22	5	1	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324585--324672	46	1.9	46	95	0	158	44	15	23	15	1.86
325451--325894	106	4.3	103	85	7	585	35	24	18	21	1.96
325801--325996	64	3.0	64	91	2	313	34	26	18	20	1.96
325936--326146	106	2.0	106	90	1	334	33	27	18	21	1.96
325703--326127	233	1.8	231	89	3	672	34	25	18	21	1.96
327651--327733	40	2.2	40	78	12	93	22	6	1	69	1.17
331054--331084	14	2.2	14	94	0	53	32	0	6	61	1.21
331897--331926	2	15.0	2	100	0	60	50	0	0	50	1.00
334735--334856	49	2.5	50	87	1	174	30	9	20	40	1.83
335165--335195	15	2.1	15	100	0	62	58	6	12	22	1.58
335884--335920	18	2.0	20	89	10	60	37	10	0	51	1.37
336974--337029	26	2.2	26	100	0	112	48	0	14	37	1.44
337877--337954	39	2.0	39	87	0	111	24	6	11	57	1.57
351676--351794	49	2.4	50	84	1	159	29	9	20	41	1.83
352809--352845	18	2.0	20	89	10	60	37	10	0	51	1.37
354116--354150	13	2.6	14	86	9	54	45	8	14	31	1.75
355607--355684	39	2.0	39	85	5	104	25	5	12	56	1.57
357066--357124	29	2.0	29	93	0	100	50	11	11	25	1.73
362939--362997	19	3.0	19	71	22	50	38	0	6	54	1.27
362992--363022	14	2.2	14	94	0	53	32	0	6	61	1.21
363953--364084	20	6.5	20	79	7	106	33	23	18	25	1.97
363960--364078	61	2.0	61	86	3	168	34	23	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364252--364295	22	2.0	22	91	8	72	22	45	13	18	1.84
364252--364303	22	2.5	21	84	12	63	23	44	11	21	1.84
364559--364616	20	2.9	20	89	0	80	17	15	22	44	1.86
365935--365979	18	2.5	18	88	0	72	26	44	15	13	1.83
366461--366516	20	2.8	20	83	2	69	37	23	23	16	1.93
366500--366590	32	2.8	33	89	3	139	48	19	18	13	1.81
366607--366664	14	3.9	14	77	16	62	10	17	24	48	1.78
366602--366680	32	2.4	33	93	2	133	11	18	22	46	1.81
366602--366650	14	3.1	16	72	21	57	8	18	24	48	1.75
366665--366708	20	2.2	20	84	4	54	20	20	20	38	1.94
368588--368640	14	3.9	13	76	9	52	33	0	18	47	1.49
368709--368747	20	2.0	20	94	0	69	46	30	10	12	1.75
368753--368817	19	3.7	19	80	15	86	47	18	20	13	1.82
368843--368892	20	2.5	20	93	3	84	18	24	26	32	1.97
369105--369155	20	2.5	20	96	0	93	19	29	19	31	1.97
370129--370153	12	2.1	12	100	0	50	72	0	28	0	0.86
372445--372571	33	3.8	33	88	4	202	42	19	22	14	1.88
372446--372578	66	2.0	66	97	0	248	42	19	21	16	1.89
372580--372632	19	2.8	19	94	0	88	15	20	20	43	1.88
372739--372775	14	2.6	14	91	0	65	45	24	0	29	1.53
374132--374337	42	4.9	41	72	9	155	23	17	36	22	1.95
374132--374198	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374162--374337	84	2.1	84	97	0	334	23	17	37	21	1.94
374554--374740	91	2.0	90	90	6	295	47	19	11	21	1.81
374907--375037	63	2.1	63	97	0	244	23	37	17	21	1.94
376492--376636	19	8.1	19	75	16	139	45	20	22	11	1.83
376517--376581	33	2.0	33	93	0	112	41	23	24	10	1.86
376500--376636	52	2.6	52	91	1	211	44	21	22	11	1.84
376632--376698	19	3.5	18	78	11	71	8	16	25	49	1.74
377216--377268	20	2.7	20	93	0	88	26	20	28	24	1.99
377217--377370	40	3.8	40	82	5	166	25	18	24	31	1.97
377277--377370	20	4.7	20	95	0	161	27	18	23	30	1.97
382070--382109	5	8.0	5	83	10	55	17	0	2	80	0.83
382070--382113	11	4.0	11	83	16	56	18	0	2	79	0.83
382070--382114	16	2.9	16	83	12	58	20	0	2	77	0.87
385748--385780	15	2.1	17	88	11	52	24	0	0	75	0.80
385833--385954	49	2.5	50	86	1	165	30	8	20	40	1.81
386253--386283	15	2.1	15	93	0	53	61	6	12	19	1.53
387126--387160	2	17.5	2	100	0	70	51	0	0	48	1.00
389040--389121	3	28.0	3	83	9	107	65	0	1	32	1.00
389047--389136	22	4.2	22	81	14	109	70	0	1	28	0.95
389050--389128	19	4.1	19	84	9	97	68	0	1	30	0.98
389059--389146	15	5.6	14	78	14	59	72	0	2	25	0.96
389063--389144	6	15.8	5	75	20	55	71	0	2	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389430--389466	18	2.0	20	89	10	60	37	10	0	51	1.37
392781--392813	15	2.1	17	88	11	52	24	0	0	75	0.80
392866--392987	49	2.5	50	84	1	156	29	8	21	40	1.82
393283--393314	15	2.1	15	94	0	55	62	6	12	18	1.50
393989--394024	14	2.6	14	90	0	54	72	5	8	13	1.27
394097--394152	19	2.9	19	73	7	60	69	3	3	23	1.20
395977--397086	105	10.6	105	95	0	1909	22	18	25	33	1.97
397853--397961	56	1.9	57	87	3	159	12	21	12	53	1.72
410642--410689	2	24.0	2	100	0	96	50	0	0	50	1.00
412541--412622	3	28.0	3	83	9	107	65	0	1	32	1.00
412564--412638	35	2.1	35	83	9	91	70	1	1	26	1.03
412923--412959	18	2.0	20	89	10	60	37	10	0	51	1.37
416259--416291	15	2.1	17	88	11	52	24	0	0	75	0.80
416344--416455	49	2.3	49	86	4	147	28	8	21	41	1.83
416753--416784	15	2.1	15	94	0	55	62	6	12	18	1.50
417630--417655	2	13.0	2	100	0	52	50	0	0	50	1.00
418021--418057	18	2.1	18	89	0	56	54	2	0	43	1.14
419504--419591	3	30.0	3	84	8	119	67	0	1	31	0.99
419504--419597	42	2.2	43	86	7	138	67	0	2	30	1.03
419511--419607	28	3.4	27	84	8	97	70	1	1	27	1.01
419898--419934	18	2.0	20	89	10	60	37	10	0	51	1.37
423314--423344	15	2.1	15	100	0	62	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423389--423510	49	2.5	50	86	1	165	31	8	18	40	1.80
423801--423831	15	2.1	15	93	0	53	61	6	12	19	1.53
428740--428860	49	2.5	51	85	10	164	31	9	19	39	1.83
429169--429199	15	2.1	15	93	0	53	58	3	12	25	1.50
431195--431229	13	2.6	14	86	9	54	45	8	14	31	1.75
432685--432762	39	2.0	39	85	5	104	24	6	12	56	1.60
432783--432808	2	13.0	2	100	0	52	50	0	50	0	1.00
434157--434215	29	2.0	29	93	0	100	50	11	11	25	1.73
438844--438902	29	2.0	29	93	0	100	52	11	11	23	1.71
440080--440110	14	2.2	14	94	0	53	32	0	6	61	1.21

Tables:   1   2   3