genome.fa.s8923.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008923.1 Hibiscus syriacus cultivar Beakdansim tig00112227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  468757

Tables:   1   2   3   

This is table  3  of  3  ( 284 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441039--441150	20	5.5	20	76	9	75	33	23	18	24	1.97
441318--441361	22	2.0	22	100	0	88	18	45	18	18	1.86
441624--441682	20	3.0	20	87	0	73	16	18	22	42	1.89
441819--441873	25	2.2	24	78	15	58	20	9	18	52	1.71
443002--443046	18	2.5	18	88	0	72	26	44	15	13	1.83
443528--443594	20	3.4	20	83	2	82	40	23	20	14	1.90
443566--443657	33	2.8	34	87	11	129	46	20	18	14	1.83
443583--443640	14	3.9	14	77	16	62	48	22	17	12	1.80
443567--443657	32	2.8	33	93	3	157	47	20	18	13	1.82
443674--443713	14	2.9	14	96	0	71	10	15	25	50	1.74
443714--443769	20	2.8	19	84	7	67	16	23	23	37	1.93
445638--445673	14	2.6	14	90	0	54	30	0	22	47	1.52
445756--445794	20	2.0	20	94	0	69	46	30	10	12	1.75
445800--445864	19	3.7	19	84	15	95	46	18	21	13	1.84
445890--445976	20	4.4	20	94	2	142	17	25	24	33	1.96
445890--445976	39	2.2	39	91	4	140	17	25	24	33	1.96
446157--446181	12	2.1	12	100	0	50	72	0	28	0	0.86
448473--448603	19	7.7	19	63	23	76	44	19	21	14	1.86
448473--448599	33	3.8	33	85	4	184	44	19	21	14	1.87
448474--448606	66	2.0	66	94	0	230	42	19	21	16	1.89
448628--448664	19	1.9	19	100	0	74	10	21	18	48	1.78
448630--448674	19	2.4	19	88	0	63	15	17	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448781--448817	14	2.6	14	91	0	65	45	24	0	29	1.53
450173--450378	42	4.9	41	72	9	155	22	17	36	22	1.95
450203--450378	84	2.1	84	98	0	343	23	17	38	21	1.93
450595--450781	91	2.0	90	91	6	304	47	19	12	21	1.82
450925--451066	63	2.3	63	85	2	142	26	35	16	20	1.94
450948--451078	63	2.1	63	97	0	244	23	35	18	22	1.95
452559--452621	33	1.9	33	93	0	108	42	22	23	11	1.85
452534--452678	19	8.1	19	73	16	103	45	17	22	13	1.84
452542--452678	52	2.6	52	89	1	193	44	18	22	13	1.86
453269--453398	20	6.4	20	84	5	136	25	18	24	31	1.97
458094--458138	22	2.0	22	87	8	65	17	0	2	80	0.82
458097--458138	15	2.7	16	78	14	52	16	0	2	80	0.81
461664--461696	15	2.1	17	88	11	52	24	0	0	75	0.80
461747--461868	49	2.4	49	85	4	156	30	8	19	41	1.81
463024--463064	2	20.5	2	100	0	82	51	0	0	48	1.00
463432--463469	19	2.1	18	90	5	58	55	2	0	42	1.14
464933--465031	3	34.0	3	79	17	111	65	0	1	33	0.99
464938--465032	26	3.7	25	80	17	106	67	0	0	32	0.91
464941--465030	29	3.0	30	80	18	100	66	0	0	33	0.92
464933--465031	44	2.4	41	86	8	137	65	0	1	33	0.99
464999--465051	14	3.9	13	87	7	52	77	3	1	16	1.01
465332--465368	18	2.0	20	89	10	60	37	10	0	51	1.37

Tables:   1   2   3

The End!