genome.fa.s8936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008936.1 Hibiscus syriacus cultivar Beakdansim tig00112254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  973811

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245--546	68	4.4	68	86	3	412	31	13	24	30	1.94
547--905	81	4.5	81	87	1	488	37	10	22	29	1.87
547--883	160	2.1	162	88	2	500	36	10	22	29	1.88
15875--15899	9	2.8	9	100	0	50	12	0	8	80	0.92
26307--26371	1	65.0	1	78	0	67	89	7	1	1	0.62
26313--26372	15	3.9	15	89	4	93	88	10	0	1	0.59
26307--26372	24	2.9	22	84	8	87	87	9	1	1	0.66
28215--28305	45	2.0	46	86	2	130	27	18	26	27	1.98
28325--28363	20	2.0	20	89	0	60	20	15	33	30	1.94
29003--29046	19	2.3	19	80	7	54	54	22	6	15	1.65
31039--31118	22	3.6	22	79	5	99	23	25	26	25	2.00
31043--31137	44	2.2	42	87	7	129	24	22	26	27	2.00
31043--31137	21	4.4	21	77	9	86	24	22	26	27	2.00
35697--35787	45	2.0	46	89	2	139	26	18	27	27	1.98
35807--35845	20	2.0	20	89	0	60	20	15	33	30	1.94
36108--36359	109	2.3	106	85	3	326	33	24	19	23	1.97
38436--38484	3	16.7	3	91	4	82	28	0	2	69	1.00
39099--39152	2	27.0	2	100	0	108	50	0	0	50	1.00
41228--41301	37	2.0	37	86	2	103	47	6	2	43	1.44
44668--44990	81	4.0	79	81	7	335	24	17	24	33	1.97
44991--45104	33	3.5	32	85	4	147	33	10	16	39	1.83
45052--45265	72	3.0	67	79	15	177	36	13	21	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45157--45273	36	3.2	36	97	0	216	38	14	21	25	1.91
45172--45288	21	6.1	21	69	23	105	39	14	21	24	1.91
47050--47103	12	4.3	12	75	9	54	1	11	5	81	0.93
47050--47112	19	3.3	19	78	8	74	1	12	4	80	0.93
47046--47132	26	3.4	25	81	10	88	2	14	4	78	1.02
47081--47132	8	6.1	8	80	10	59	1	17	1	78	0.93
60339--60375	19	1.9	19	89	10	58	48	10	5	35	1.61
64883--64978	5	17.2	6	75	21	77	41	0	4	54	1.20
64894--65056	5	33.0	5	69	21	78	36	0	4	58	1.22
64885--65059	7	25.1	7	74	15	123	37	0	4	57	1.23
64883--64978	2	51.5	2	72	24	77	41	0	4	54	1.20
65037--65084	4	11.5	4	78	8	51	29	0	2	68	1.01
64991--65074	25	3.5	24	72	18	77	33	1	3	61	1.20
65355--65411	22	2.6	22	91	0	87	47	15	15	21	1.82
65442--65483	20	2.0	21	86	4	59	23	30	21	23	1.99
66253--66315	31	2.0	31	87	0	90	34	17	17	30	1.93
67584--67625	22	1.9	22	85	9	59	42	7	9	40	1.65
68895--68974	43	1.9	41	87	5	115	22	15	1	61	1.41
69366--69421	2	28.0	2	100	0	112	50	0	0	50	1.00
71931--71956	12	2.2	12	100	0	52	7	34	23	34	1.83
74007--74047	18	2.3	18	91	4	66	63	2	4	29	1.28
74280--74393	51	2.2	52	82	11	130	23	23	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74421--74497	29	2.7	29	87	0	109	41	10	15	32	1.81
76648--76692	21	2.0	23	84	16	60	55	8	8	26	1.60
77023--77053	13	2.3	14	94	5	55	29	6	3	61	1.37
78222--78261	20	2.0	20	90	0	62	35	12	30	22	1.91
82808--82870	30	2.1	30	82	2	74	42	3	12	41	1.59
82815--82876	30	2.1	30	84	0	79	43	3	14	38	1.62
85294--85346	25	2.1	27	82	10	67	26	7	0	66	1.18
85359--85389	16	1.9	16	93	0	53	35	3	0	61	1.12
85377--85415	19	2.0	20	90	5	62	30	0	0	69	0.89
90368--90412	14	3.1	14	84	6	54	22	8	0	68	1.16
90383--90412	5	6.0	5	92	0	51	20	3	0	76	0.92
92620--92649	15	1.9	16	93	6	53	86	13	0	0	0.57
98015--98169	84	1.8	85	90	1	249	30	0	12	56	1.42
108964--109037	29	2.6	29	97	2	141	43	16	21	18	1.88
110854--110921	32	2.1	34	91	5	113	48	16	8	26	1.75
110900--110941	20	2.1	20	100	0	84	52	4	9	33	1.55
111386--111445	29	2.1	29	96	3	113	36	0	3	60	1.14
125077--125107	16	1.9	16	93	0	53	54	19	6	19	1.65
125913--125968	2	28.5	2	96	3	105	50	0	0	50	1.00
135239--135311	34	2.1	34	82	0	83	23	10	19	46	1.81
138335--138366	15	2.1	16	88	11	50	43	0	12	43	1.42
145895--145964	20	3.5	20	82	1	88	38	15	7	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148927--148966	20	2.0	20	95	0	71	30	20	17	32	1.95
149012--149078	20	3.4	19	82	10	73	40	17	4	37	1.70
154042--154358	20	13.9	25	74	18	184	45	11	22	21	1.83
154010--154282	46	6.0	46	81	11	337	45	10	23	20	1.82
154126--154168	13	3.3	13	75	12	52	53	9	23	13	1.69
154206--154348	65	2.2	66	89	1	216	44	10	22	23	1.83
154088--154361	111	2.4	116	87	6	398	45	10	22	21	1.83
158429--158500	35	2.1	35	94	0	126	41	8	20	29	1.81
158875--158914	18	2.3	18	83	8	57	25	5	2	67	1.23
158969--158993	2	12.5	2	100	0	50	48	0	0	52	1.00
159185--159228	16	2.8	16	80	19	56	15	4	4	75	1.14
159388--159466	40	2.0	40	85	9	110	30	5	7	56	1.49
160495--160524	15	2.1	14	93	6	51	16	0	3	80	0.85
162781--162818	19	2.1	19	90	9	62	15	7	5	71	1.28
169860--169958	51	1.9	51	83	0	126	48	14	22	15	1.80
170976--171584	106	5.9	105	85	7	757	35	22	18	23	1.95
171967--172038	35	2.1	35	94	0	126	41	8	20	29	1.81
172413--172452	18	2.3	18	83	8	57	25	5	2	67	1.23
172503--172660	86	1.9	82	82	10	194	34	5	2	56	1.36
172718--172746	2	14.5	2	100	0	58	48	0	0	51	1.00
176275--176654	46	8.3	46	84	6	493	45	10	22	21	1.82
176491--176532	12	3.3	12	76	23	50	42	9	21	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176333--176654	66	4.7	66	75	17	250	45	9	23	21	1.82
177906--177936	15	2.1	15	93	0	53	61	0	0	38	0.96
182314--182407	23	4.0	23	75	2	80	27	20	21	30	1.98
182326--182437	24	4.8	24	76	7	97	26	19	22	31	1.98
184132--184172	8	5.1	8	82	11	57	78	0	12	9	0.98
186227--186268	19	2.2	19	100	0	84	57	16	0	26	1.40
187382--187891	139	3.7	139	87	1	700	26	20	17	34	1.95
188445--188534	42	2.1	42	79	4	101	27	22	22	27	1.99
188627--188773	53	2.8	53	85	2	197	44	17	10	27	1.81
188588--188840	99	2.4	103	83	5	298	42	19	9	28	1.83
188858--189151	55	5.4	55	87	0	365	43	13	8	34	1.75
188857--189151	109	2.7	110	84	3	371	43	13	8	34	1.75
190426--190481	28	2.0	28	82	0	67	25	8	32	33	1.87
191185--191268	7	12.4	7	85	11	97	0	10	0	89	0.49
191180--191259	20	4.2	20	85	10	105	0	10	0	90	0.47
191198--191260	1	63.0	1	87	0	90	0	6	0	93	0.34
191180--191269	32	2.8	32	84	3	126	0	11	0	88	0.50
192609--192687	6	11.3	7	78	15	67	54	11	18	15	1.70
192604--192686	28	3.0	27	80	13	82	51	12	19	16	1.75
192636--192687	20	2.5	21	84	6	70	59	7	17	15	1.58
197155--197184	2	15.0	2	100	0	60	50	0	0	50	1.00
197361--197506	63	2.3	63	98	0	283	32	16	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198131--198245	60	1.9	60	85	0	158	25	25	24	25	2.00
199439--199664	66	3.4	66	85	8	302	32	16	14	36	1.88
200170--200222	22	2.5	21	80	14	56	24	26	15	33	1.95
205241--205271	9	3.4	9	95	0	53	12	12	6	67	1.40
206793--206832	20	2.0	20	85	5	53	25	15	27	32	1.95
210879--211090	66	3.2	65	89	2	318	31	16	14	37	1.89
214383--214439	3	19.0	3	88	0	78	31	35	1	31	1.68
215340--215385	23	2.0	22	83	12	56	54	6	0	39	1.26
218475--218524	15	3.3	15	77	0	55	20	12	8	60	1.57
219930--219987	22	2.6	22	76	15	57	43	0	5	51	1.24

Tables:   1   2   3   4   5