genome.fa.s8936.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008936.1 Hibiscus syriacus cultivar Beakdansim tig00112254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  973811

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853941--854139	97	2.0	98	86	0	274	39	11	15	34	1.82
854048--854214	75	2.2	75	84	0	217	40	11	13	34	1.81
853866--854236	172	2.2	173	83	0	465	39	12	14	33	1.84
854195--854259	23	2.8	23	92	0	103	35	18	12	33	1.88
854290--854575	153	1.9	150	87	3	421	40	10	12	36	1.79
855865--855913	23	2.1	24	92	3	82	38	6	20	34	1.77
855987--856468	198	2.4	199	81	5	532	30	15	14	38	1.89
859612--860636	200	5.1	198	82	6	1125	31	13	16	39	1.87
862376--862419	3	14.7	3	80	0	52	27	29	0	43	1.55
862386--862420	18	1.9	18	100	0	70	22	28	0	48	1.51
863543--863595	15	3.5	15	86	0	79	33	3	45	16	1.66
863987--864895	198	4.6	198	91	2	1412	31	15	17	36	1.91
865037--865087	20	2.6	20	87	3	68	60	9	1	27	1.39
866236--866271	17	2.1	17	100	0	72	30	11	8	50	1.67
867263--867318	24	2.4	24	77	14	64	51	8	0	39	1.33
869168--870535	182	7.6	182	91	2	2087	28	16	12	42	1.84
875532--875641	40	2.8	40	94	0	193	34	28	14	22	1.94
888234--888278	2	22.5	2	100	0	90	48	0	0	51	1.00
889364--889768	151	2.7	150	88	3	593	37	11	13	37	1.81
889908--890314	115	3.5	115	86	3	532	30	22	13	33	1.93
892506--892579	31	2.3	33	86	4	98	47	1	5	45	1.34
894195--894226	6	5.3	6	96	0	55	34	34	12	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894651--894689	20	2.0	20	94	0	69	66	5	17	10	1.39
898526--898624	48	2.1	48	84	0	126	27	11	21	40	1.87
905435--905557	42	3.0	42	80	5	117	24	21	24	30	1.99
905649--905760	42	2.7	42	80	5	129	25	25	20	27	1.99
905862--905963	42	2.5	41	80	1	114	24	23	21	30	1.99
906293--906405	42	2.7	40	79	5	100	25	23	22	29	1.99
905326--907670	214	10.9	215	91	3	3585	32	15	19	31	1.94
906519--906610	42	2.2	42	80	1	105	23	23	23	28	2.00
906806--906855	19	2.5	20	90	6	84	26	30	18	26	1.98
906957--907058	42	2.5	41	78	1	105	25	23	22	28	1.99
906826--907670	213	3.9	215	92	1	1392	32	15	19	31	1.94
907170--907271	42	2.5	42	81	1	125	25	22	21	30	1.99
911282--911339	31	1.9	30	86	6	82	58	5	17	18	1.56
912535--912584	13	4.2	12	77	15	50	74	2	0	24	0.93
920844--920890	20	2.4	19	82	10	67	53	10	17	19	1.72
921024--921070	20	2.4	18	80	19	58	55	10	14	19	1.68
920632--921103	180	2.6	182	89	2	700	42	14	16	26	1.87
923230--923294	21	3.1	21	88	0	94	41	10	29	18	1.84
923328--923393	33	2.0	33	93	0	114	30	0	46	22	1.52
924589--924613	4	6.2	4	100	0	50	24	0	28	48	1.52
925193--925241	19	2.6	19	96	0	89	32	2	10	55	1.45
925518--926069	179	3.1	179	94	0	960	34	14	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928838--928885	23	2.1	23	92	0	78	35	16	10	37	1.83
928838--929091	87	2.9	87	95	0	438	33	13	9	42	1.78
928922--928966	23	2.0	23	86	0	63	37	15	8	37	1.79
930639--930810	91	1.9	92	92	1	292	22	20	16	39	1.92
931409--931517	37	3.0	37	77	9	116	36	15	22	24	1.93
931570--931616	20	2.3	21	88	3	69	40	8	21	29	1.83
931599--931730	39	3.4	38	77	2	129	34	10	22	32	1.89
931704--932039	40	8.4	40	92	0	512	41	13	16	27	1.87
931726--931786	20	3.0	20	64	17	54	45	18	16	19	1.85
931794--931862	23	3.3	23	61	23	60	39	14	14	31	1.86
931704--932039	159	2.1	160	91	1	532	41	13	16	27	1.87
933447--933594	52	2.9	50	83	5	190	25	20	17	36	1.94
935025--935088	9	6.8	9	81	10	74	0	17	0	82	0.66
935021--935085	31	2.1	31	88	5	96	0	16	0	83	0.66
939958--940022	20	3.2	20	70	18	53	61	4	4	29	1.36
942683--942715	17	1.9	17	93	0	57	78	0	3	18	0.87
942833--942872	20	2.0	20	85	5	53	45	5	0	50	1.23
943140--943210	31	2.3	31	90	4	108	52	5	1	40	1.34
943400--943439	17	2.5	16	88	8	55	72	2	2	22	1.09
943637--943701	23	2.7	23	79	13	69	26	3	4	66	1.26
945071--945130	22	3.0	20	79	11	68	61	3	3	31	1.28
951435--951482	18	2.7	18	100	0	96	47	4	0	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953694--953775	28	2.9	29	85	7	107	26	0	42	30	1.56
953694--953778	27	3.1	28	86	5	111	25	0	43	30	1.55
957382--957455	31	2.4	31	86	0	103	54	12	9	24	1.67
958214--958296	33	2.6	32	88	3	139	12	10	37	39	1.78
961049--961107	28	2.1	29	84	9	77	38	10	5	45	1.60
961947--962011	23	2.8	23	90	0	103	40	20	18	21	1.92
967821--968131	61	5.1	61	86	6	389	41	9	0	48	1.38
967823--968140	29	10.5	30	83	8	349	40	9	0	49	1.37
968349--968381	16	2.1	16	88	5	50	63	0	9	27	1.24
968364--968517	30	5.1	30	77	7	152	54	3	7	34	1.45
969365--969397	12	2.8	12	90	9	50	45	0	0	54	0.99
969436--969490	28	2.0	28	86	10	78	38	3	0	58	1.16
972633--972658	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5

The End!