genome.fa.s8940.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008940.1 Hibiscus syriacus cultivar Beakdansim tig00112259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  476028

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357903--357949	16	3.0	16	84	9	53	29	0	10	59	1.31
357924--357954	15	2.1	14	94	5	53	38	0	6	54	1.26
359155--359199	23	2.0	23	86	0	63	40	2	2	55	1.24
359149--359199	23	2.5	20	77	20	52	39	1	1	56	1.22
362743--362803	28	2.2	28	96	0	113	57	11	0	31	1.34
362780--362828	21	2.3	21	85	3	71	53	16	0	30	1.43
363300--363373	25	3.2	25	62	31	63	21	36	21	20	1.95
363310--363384	20	3.5	20	67	22	62	22	40	18	18	1.92
363303--363392	45	2.0	45	100	0	180	22	37	20	20	1.94
363321--363394	25	3.2	25	64	25	70	21	41	17	18	1.90
363310--363421	45	2.6	45	88	4	158	20	42	16	20	1.89
363459--363534	29	2.6	29	87	4	100	14	31	35	18	1.91
388548--388681	67	2.0	67	100	0	268	49	17	4	28	1.66
389345--389383	19	2.1	19	100	0	78	33	5	10	51	1.58
391951--392003	21	2.5	21	93	0	88	28	28	22	20	1.99
399616--399711	46	2.0	48	94	6	169	47	21	12	17	1.81
429329--429395	31	2.2	31	88	0	98	40	2	7	49	1.46
430302--430345	21	2.1	21	100	0	88	40	13	18	27	1.88
431436--431493	23	2.5	23	91	0	89	18	13	10	56	1.65
432649--432680	2	16.0	2	100	0	64	50	0	0	50	1.00
434009--434325	165	1.9	169	86	3	462	40	7	13	39	1.73
437884--437942	29	2.0	29	83	0	73	30	16	11	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439015--439044	15	2.0	15	93	0	51	40	20	23	16	1.91
449291--449378	31	2.8	32	78	13	101	51	3	0	45	1.18
450018--450191	60	2.9	59	80	7	183	32	22	6	38	1.79
459332--459372	21	1.9	22	85	5	57	51	12	2	34	1.52
459492--459531	15	2.7	15	88	0	53	70	2	2	25	1.13
459897--459963	34	2.0	34	88	5	100	32	11	35	19	1.88
460059--460141	15	5.4	16	71	16	59	50	0	0	49	1.00
468908--468965	30	1.9	30	86	6	82	43	5	17	34	1.71
470019--470078	28	2.1	28	93	0	102	38	30	8	23	1.84
470019--470094	28	2.7	28	85	4	91	38	28	10	22	1.87
470988--471057	29	2.4	29	85	2	86	48	5	22	22	1.72
471957--472186	96	2.4	96	85	1	291	33	16	13	35	1.89
472484--472525	3	14.0	3	100	0	84	66	0	0	33	0.92
472902--472960	31	1.9	31	83	13	77	40	15	5	38	1.69
474446--474472	12	2.2	12	100	0	54	37	0	18	44	1.50

Tables:   1   2   3

The End!